Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23860 and AMB_RS02120 are separated by 182 nucleotides AMB_RS02120 and AMB_RS02125 are separated by 344 nucleotides AMB_RS02125 and AMB_RS23865 are separated by 244 nucleotides
AMB_RS23860: AMB_RS23860 - IS256 family transposase, at 445,213 to 445,566
_RS23860
AMB_RS02120: AMB_RS02120 - hypothetical protein, at 445,749 to 446,084
_RS02120
AMB_RS02125: AMB_RS02125 - LemA family protein, at 446,429 to 447,079
_RS02125
AMB_RS23865: AMB_RS23865 - DUF2786 domain-containing protein, at 447,324 to 448,025
_RS23865
Position (kb) 446
447
448 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 445.512 kb on + strand, within AMB_RS23860 at 445.564 kb on + strand at 445.564 kb on + strand at 445.564 kb on + strand at 445.564 kb on + strand at 445.564 kb on + strand at 445.565 kb on - strand at 445.565 kb on - strand at 445.565 kb on - strand at 445.617 kb on + strand at 445.617 kb on + strand at 445.618 kb on - strand at 445.618 kb on - strand at 445.618 kb on - strand at 445.684 kb on - strand at 445.689 kb on + strand at 445.692 kb on + strand at 445.692 kb on + strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.693 kb on - strand at 445.795 kb on - strand, within AMB_RS02120 at 445.824 kb on + strand, within AMB_RS02120 at 445.825 kb on - strand, within AMB_RS02120 at 445.853 kb on + strand, within AMB_RS02120 at 445.860 kb on + strand, within AMB_RS02120 at 445.860 kb on + strand, within AMB_RS02120 at 445.861 kb on - strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.875 kb on + strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.876 kb on - strand, within AMB_RS02120 at 445.909 kb on + strand, within AMB_RS02120 at 445.909 kb on + strand, within AMB_RS02120 at 445.938 kb on - strand, within AMB_RS02120 at 445.938 kb on - strand, within AMB_RS02120 at 445.948 kb on + strand, within AMB_RS02120 at 446.064 kb on + strand at 446.064 kb on + strand at 446.064 kb on + strand at 446.064 kb on + strand at 446.065 kb on - strand at 446.065 kb on - strand at 446.066 kb on + strand at 446.066 kb on + strand at 446.109 kb on - strand at 446.109 kb on - strand at 446.157 kb on + strand at 446.158 kb on - strand at 446.158 kb on - strand at 446.158 kb on - strand at 446.160 kb on + strand at 446.160 kb on + strand at 446.160 kb on + strand at 446.160 kb on + strand at 446.160 kb on + strand at 446.162 kb on + strand at 446.302 kb on + strand at 446.350 kb on + strand at 446.351 kb on - strand at 446.398 kb on - strand at 446.435 kb on - strand at 446.502 kb on + strand, within AMB_RS02125 at 446.710 kb on - strand, within AMB_RS02125 at 446.815 kb on + strand, within AMB_RS02125 at 446.815 kb on + strand, within AMB_RS02125 at 447.030 kb on - strand at 447.088 kb on - strand at 447.088 kb on - strand at 447.088 kb on - strand at 447.176 kb on + strand at 447.176 kb on + strand at 447.176 kb on + strand at 447.176 kb on + strand at 447.177 kb on - strand at 447.177 kb on - strand at 447.177 kb on - strand at 447.177 kb on - strand at 447.177 kb on - strand at 447.177 kb on - strand at 447.187 kb on + strand at 447.278 kb on - strand at 447.395 kb on + strand, within AMB_RS23865 at 447.620 kb on - strand, within AMB_RS23865 at 447.657 kb on + strand, within AMB_RS23865 at 447.853 kb on + strand, within AMB_RS23865 at 448.024 kb on - strand at 448.046 kb on + strand at 448.073 kb on + strand at 448.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 445,512 + AMB_RS23860 0.84 -1.4 445,564 + -0.5 445,564 + -0.4 445,564 + -4.3 445,564 + +1.7 445,564 + -0.4 445,565 - -0.3 445,565 - +0.3 445,565 - +0.4 445,617 + -0.0 445,617 + +0.4 445,618 - -0.0 445,618 - +0.2 445,618 - -0.7 445,684 - +0.3 445,689 + +1.1 445,692 + +0.5 445,692 + -1.4 445,693 - +1.0 445,693 - -0.0 445,693 - -0.2 445,693 - -0.3 445,693 - +0.2 445,693 - +1.0 445,693 - -0.2 445,693 - +0.2 445,795 - AMB_RS02120 0.14 -0.1 445,824 + AMB_RS02120 0.22 -0.3 445,825 - AMB_RS02120 0.23 +0.4 445,853 + AMB_RS02120 0.31 +0.6 445,860 + AMB_RS02120 0.33 -1.0 445,860 + AMB_RS02120 0.33 -0.7 445,861 - AMB_RS02120 0.33 +1.0 445,875 + AMB_RS02120 0.38 -0.6 445,875 + AMB_RS02120 0.38 +1.0 445,875 + AMB_RS02120 0.38 -0.3 445,875 + AMB_RS02120 0.38 +0.4 445,875 + AMB_RS02120 0.38 +0.2 445,875 + AMB_RS02120 0.38 +0.5 445,876 - AMB_RS02120 0.38 -0.8 445,876 - AMB_RS02120 0.38 -0.1 445,876 - AMB_RS02120 0.38 -0.6 445,876 - AMB_RS02120 0.38 +1.9 445,876 - AMB_RS02120 0.38 +0.8 445,876 - AMB_RS02120 0.38 -0.2 445,876 - AMB_RS02120 0.38 +0.6 445,876 - AMB_RS02120 0.38 +0.2 445,876 - AMB_RS02120 0.38 +0.4 445,876 - AMB_RS02120 0.38 +0.3 445,876 - AMB_RS02120 0.38 +0.2 445,876 - AMB_RS02120 0.38 -0.1 445,909 + AMB_RS02120 0.48 -0.0 445,909 + AMB_RS02120 0.48 -0.5 445,938 - AMB_RS02120 0.56 +0.1 445,938 - AMB_RS02120 0.56 -0.1 445,948 + AMB_RS02120 0.59 -0.5 446,064 + -0.4 446,064 + -1.4 446,064 + -0.3 446,064 + -0.0 446,065 - -0.4 446,065 - +0.2 446,066 + -0.7 446,066 + -0.1 446,109 - -0.3 446,109 - +0.0 446,157 + -0.1 446,158 - -2.0 446,158 - -0.1 446,158 - -0.6 446,160 + +0.0 446,160 + -0.3 446,160 + -0.5 446,160 + -0.6 446,160 + +0.2 446,162 + -0.5 446,302 + -0.6 446,350 + +0.2 446,351 - -0.1 446,398 - -1.3 446,435 - -1.7 446,502 + AMB_RS02125 0.11 -2.9 446,710 - AMB_RS02125 0.43 -1.5 446,815 + AMB_RS02125 0.59 +0.1 446,815 + AMB_RS02125 0.59 +0.1 447,030 - -0.3 447,088 - -0.5 447,088 - +0.4 447,088 - -0.3 447,176 + -1.4 447,176 + +0.1 447,176 + -1.1 447,176 + -1.9 447,177 - +0.3 447,177 - -0.1 447,177 - -1.0 447,177 - -1.1 447,177 - -2.8 447,177 - -0.2 447,187 + -0.0 447,278 - -0.3 447,395 + AMB_RS23865 0.10 -1.1 447,620 - AMB_RS23865 0.42 -0.4 447,657 + AMB_RS23865 0.47 -0.3 447,853 + AMB_RS23865 0.75 -0.6 448,024 - -0.7 448,046 + -0.3 448,073 + -0.8 448,073 + -0.9
Or see this region's nucleotide sequence