Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01810 and AMB_RS01815 overlap by 4 nucleotides AMB_RS01815 and AMB_RS01820 overlap by 1 nucleotides AMB_RS01820 and AMB_RS01825 are separated by 391 nucleotides AMB_RS01825 and AMB_RS01830 overlap by 4 nucleotides
AMB_RS01810: AMB_RS01810 - DNA helicase, at 390,009 to 391,580
_RS01810
AMB_RS01815: AMB_RS01815 - hypothetical protein, at 391,577 to 391,933
_RS01815
AMB_RS01820: AMB_RS01820 - DUF3987 domain-containing protein, at 391,933 to 394,206
_RS01820
AMB_RS01825: AMB_RS01825 - hypothetical protein, at 394,598 to 395,110
_RS01825
AMB_RS01830: AMB_RS01830 - hypothetical protein, at 395,107 to 395,304
_RS01830
Position (kb) 391
392
393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 390.993 kb on + strand, within AMB_RS01810 at 390.993 kb on + strand, within AMB_RS01810 at 390.993 kb on + strand, within AMB_RS01810 at 390.993 kb on + strand, within AMB_RS01810 at 390.994 kb on - strand, within AMB_RS01810 at 390.994 kb on - strand, within AMB_RS01810 at 390.994 kb on - strand, within AMB_RS01810 at 391.099 kb on + strand, within AMB_RS01810 at 391.167 kb on - strand, within AMB_RS01810 at 391.167 kb on - strand, within AMB_RS01810 at 391.309 kb on - strand, within AMB_RS01810 at 391.344 kb on - strand, within AMB_RS01810 at 391.357 kb on - strand, within AMB_RS01810 at 391.411 kb on - strand, within AMB_RS01810 at 391.411 kb on - strand, within AMB_RS01810 at 391.622 kb on - strand, within AMB_RS01815 at 391.773 kb on - strand, within AMB_RS01815 at 391.857 kb on - strand, within AMB_RS01815 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.395 kb on + strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.396 kb on - strand, within AMB_RS01820 at 392.448 kb on - strand, within AMB_RS01820 at 392.626 kb on + strand, within AMB_RS01820 at 392.791 kb on + strand, within AMB_RS01820 at 392.791 kb on + strand, within AMB_RS01820 at 392.791 kb on + strand, within AMB_RS01820 at 392.983 kb on + strand, within AMB_RS01820 at 392.983 kb on + strand, within AMB_RS01820 at 392.983 kb on + strand, within AMB_RS01820 at 392.983 kb on + strand, within AMB_RS01820 at 392.984 kb on - strand, within AMB_RS01820 at 392.984 kb on - strand, within AMB_RS01820 at 392.984 kb on - strand, within AMB_RS01820 at 392.984 kb on - strand, within AMB_RS01820 at 392.984 kb on - strand, within AMB_RS01820 at 392.984 kb on - strand, within AMB_RS01820 at 392.984 kb on - strand, within AMB_RS01820 at 392.984 kb on - strand, within AMB_RS01820 at 392.984 kb on - strand, within AMB_RS01820 at 393.071 kb on - strand, within AMB_RS01820 at 393.103 kb on + strand, within AMB_RS01820 at 393.104 kb on - strand, within AMB_RS01820 at 393.104 kb on - strand, within AMB_RS01820 at 393.104 kb on - strand, within AMB_RS01820 at 393.104 kb on - strand, within AMB_RS01820 at 393.193 kb on + strand, within AMB_RS01820 at 393.364 kb on + strand, within AMB_RS01820 at 393.364 kb on + strand, within AMB_RS01820 at 393.364 kb on + strand, within AMB_RS01820 at 393.365 kb on - strand, within AMB_RS01820 at 393.365 kb on - strand, within AMB_RS01820 at 393.365 kb on - strand, within AMB_RS01820 at 393.365 kb on - strand, within AMB_RS01820 at 393.365 kb on - strand, within AMB_RS01820 at 393.365 kb on - strand, within AMB_RS01820 at 393.365 kb on - strand, within AMB_RS01820 at 393.365 kb on - strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.366 kb on + strand, within AMB_RS01820 at 393.367 kb on - strand, within AMB_RS01820 at 393.367 kb on - strand, within AMB_RS01820 at 393.367 kb on - strand, within AMB_RS01820 at 393.367 kb on - strand, within AMB_RS01820 at 393.400 kb on + strand, within AMB_RS01820 at 393.460 kb on + strand, within AMB_RS01820 at 393.461 kb on - strand, within AMB_RS01820 at 393.765 kb on + strand, within AMB_RS01820 at 394.173 kb on - strand at 394.271 kb on + strand at 394.272 kb on - strand at 394.272 kb on - strand at 394.396 kb on + strand at 394.396 kb on + strand at 394.452 kb on + strand at 394.452 kb on + strand at 394.453 kb on - strand at 394.512 kb on + strand at 394.653 kb on + strand, within AMB_RS01825 at 394.654 kb on - strand, within AMB_RS01825 at 394.654 kb on - strand, within AMB_RS01825 at 394.769 kb on + strand, within AMB_RS01825 at 394.770 kb on - strand, within AMB_RS01825 at 394.832 kb on + strand, within AMB_RS01825 at 394.832 kb on + strand, within AMB_RS01825 at 394.832 kb on + strand, within AMB_RS01825 at 394.833 kb on - strand, within AMB_RS01825 at 394.833 kb on - strand, within AMB_RS01825 at 394.934 kb on + strand, within AMB_RS01825
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 390,993 + AMB_RS01810 0.63 -2.0 390,993 + AMB_RS01810 0.63 -1.2 390,993 + AMB_RS01810 0.63 +0.0 390,993 + AMB_RS01810 0.63 +0.3 390,994 - AMB_RS01810 0.63 -0.7 390,994 - AMB_RS01810 0.63 -0.1 390,994 - AMB_RS01810 0.63 -0.6 391,099 + AMB_RS01810 0.69 -0.2 391,167 - AMB_RS01810 0.74 -0.2 391,167 - AMB_RS01810 0.74 -2.3 391,309 - AMB_RS01810 0.83 +1.0 391,344 - AMB_RS01810 0.85 -0.5 391,357 - AMB_RS01810 0.86 -0.2 391,411 - AMB_RS01810 0.89 +0.1 391,411 - AMB_RS01810 0.89 -1.2 391,622 - AMB_RS01815 0.13 +0.7 391,773 - AMB_RS01815 0.55 -1.6 391,857 - AMB_RS01815 0.78 +0.0 392,395 + AMB_RS01820 0.20 +0.1 392,395 + AMB_RS01820 0.20 -0.2 392,395 + AMB_RS01820 0.20 -0.1 392,395 + AMB_RS01820 0.20 -0.0 392,395 + AMB_RS01820 0.20 +1.4 392,395 + AMB_RS01820 0.20 -0.5 392,395 + AMB_RS01820 0.20 +0.1 392,396 - AMB_RS01820 0.20 -0.1 392,396 - AMB_RS01820 0.20 -0.3 392,396 - AMB_RS01820 0.20 +0.7 392,396 - AMB_RS01820 0.20 -0.2 392,396 - AMB_RS01820 0.20 -1.1 392,396 - AMB_RS01820 0.20 -1.0 392,448 - AMB_RS01820 0.23 -0.4 392,626 + AMB_RS01820 0.30 -0.6 392,791 + AMB_RS01820 0.38 -2.3 392,791 + AMB_RS01820 0.38 -1.1 392,791 + AMB_RS01820 0.38 -0.0 392,983 + AMB_RS01820 0.46 +0.0 392,983 + AMB_RS01820 0.46 -0.1 392,983 + AMB_RS01820 0.46 -0.1 392,983 + AMB_RS01820 0.46 -0.1 392,984 - AMB_RS01820 0.46 -0.4 392,984 - AMB_RS01820 0.46 -0.3 392,984 - AMB_RS01820 0.46 -0.2 392,984 - AMB_RS01820 0.46 -2.0 392,984 - AMB_RS01820 0.46 +0.1 392,984 - AMB_RS01820 0.46 +0.4 392,984 - AMB_RS01820 0.46 -0.5 392,984 - AMB_RS01820 0.46 +0.2 392,984 - AMB_RS01820 0.46 +0.5 393,071 - AMB_RS01820 0.50 -0.3 393,103 + AMB_RS01820 0.51 +1.0 393,104 - AMB_RS01820 0.51 +0.5 393,104 - AMB_RS01820 0.51 -0.6 393,104 - AMB_RS01820 0.51 +0.1 393,104 - AMB_RS01820 0.51 -0.9 393,193 + AMB_RS01820 0.55 +0.2 393,364 + AMB_RS01820 0.63 -0.5 393,364 + AMB_RS01820 0.63 +0.0 393,364 + AMB_RS01820 0.63 -3.0 393,365 - AMB_RS01820 0.63 -0.4 393,365 - AMB_RS01820 0.63 -0.1 393,365 - AMB_RS01820 0.63 -0.7 393,365 - AMB_RS01820 0.63 -1.1 393,365 - AMB_RS01820 0.63 -0.4 393,365 - AMB_RS01820 0.63 -1.0 393,365 - AMB_RS01820 0.63 -0.5 393,365 - AMB_RS01820 0.63 -0.7 393,366 + AMB_RS01820 0.63 -0.4 393,366 + AMB_RS01820 0.63 -0.1 393,366 + AMB_RS01820 0.63 -1.6 393,366 + AMB_RS01820 0.63 -0.3 393,366 + AMB_RS01820 0.63 -0.5 393,366 + AMB_RS01820 0.63 -0.2 393,366 + AMB_RS01820 0.63 +0.4 393,366 + AMB_RS01820 0.63 -0.7 393,366 + AMB_RS01820 0.63 +0.6 393,366 + AMB_RS01820 0.63 -0.2 393,366 + AMB_RS01820 0.63 +0.7 393,367 - AMB_RS01820 0.63 +0.5 393,367 - AMB_RS01820 0.63 -1.0 393,367 - AMB_RS01820 0.63 -0.0 393,367 - AMB_RS01820 0.63 -0.0 393,400 + AMB_RS01820 0.65 +1.5 393,460 + AMB_RS01820 0.67 -0.1 393,461 - AMB_RS01820 0.67 +0.5 393,765 + AMB_RS01820 0.81 -0.3 394,173 - -0.5 394,271 + -0.6 394,272 - -0.4 394,272 - -3.0 394,396 + -0.2 394,396 + -0.2 394,452 + +1.1 394,452 + -0.4 394,453 - -0.8 394,512 + -0.4 394,653 + AMB_RS01825 0.11 -0.3 394,654 - AMB_RS01825 0.11 +1.0 394,654 - AMB_RS01825 0.11 +0.1 394,769 + AMB_RS01825 0.33 -0.5 394,770 - AMB_RS01825 0.34 -0.6 394,832 + AMB_RS01825 0.46 -0.6 394,832 + AMB_RS01825 0.46 -0.2 394,832 + AMB_RS01825 0.46 +0.9 394,833 - AMB_RS01825 0.46 -0.0 394,833 - AMB_RS01825 0.46 +0.4 394,934 + AMB_RS01825 0.65 +1.5
Or see this region's nucleotide sequence