Experiment: 30_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01300 and AMB_RS01305 are separated by 14 nucleotides AMB_RS01305 and AMB_RS01310 are separated by 2 nucleotides AMB_RS01310 and AMB_RS01315 are separated by 28 nucleotides
AMB_RS01300: AMB_RS01300 - aldo/keto reductase, at 287,189 to 288,178
_RS01300
AMB_RS01305: AMB_RS01305 - protocatechuate 4,5-dioxygenase subunit alpha, at 288,193 to 288,546
_RS01305
AMB_RS01310: AMB_RS01310 - protocatechuate 3,4-dioxygenase subunit beta, at 288,549 to 289,385
_RS01310
AMB_RS01315: AMB_RS01315 - 4-hydroxybenzoate 3-monooxygenase, at 289,414 to 290,589
_RS01315
Position (kb) 288
289 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 287.215 kb on + strand at 287.215 kb on + strand at 287.216 kb on - strand at 287.261 kb on + strand at 287.262 kb on - strand at 287.351 kb on + strand, within AMB_RS01300 at 287.351 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.540 kb on + strand, within AMB_RS01300 at 287.541 kb on - strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.543 kb on + strand, within AMB_RS01300 at 287.544 kb on - strand, within AMB_RS01300 at 287.544 kb on - strand, within AMB_RS01300 at 287.544 kb on - strand, within AMB_RS01300 at 287.709 kb on - strand, within AMB_RS01300 at 287.709 kb on - strand, within AMB_RS01300 at 287.709 kb on - strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.891 kb on + strand, within AMB_RS01300 at 287.892 kb on - strand, within AMB_RS01300 at 288.134 kb on + strand at 288.134 kb on + strand at 288.134 kb on + strand at 288.134 kb on + strand at 288.135 kb on - strand at 288.176 kb on + strand at 288.176 kb on + strand at 288.176 kb on + strand at 288.176 kb on + strand at 288.177 kb on - strand at 288.188 kb on + strand at 288.188 kb on + strand at 288.188 kb on + strand at 288.188 kb on + strand at 288.188 kb on + strand at 288.189 kb on - strand at 288.189 kb on - strand at 288.219 kb on - strand at 288.262 kb on + strand, within AMB_RS01305 at 288.263 kb on - strand, within AMB_RS01305 at 288.263 kb on - strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.427 kb on + strand, within AMB_RS01305 at 288.428 kb on - strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.454 kb on + strand, within AMB_RS01305 at 288.455 kb on - strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.465 kb on + strand, within AMB_RS01305 at 288.466 kb on - strand, within AMB_RS01305 at 288.466 kb on - strand, within AMB_RS01305 at 288.544 kb on + strand at 288.544 kb on + strand at 288.544 kb on + strand at 288.544 kb on + strand at 288.544 kb on + strand at 288.544 kb on + strand at 288.544 kb on + strand at 288.545 kb on - strand at 288.545 kb on - strand at 288.545 kb on - strand at 288.545 kb on - strand at 288.545 kb on - strand at 288.545 kb on - strand at 288.591 kb on + strand at 288.591 kb on + strand at 288.591 kb on + strand at 288.591 kb on + strand at 288.592 kb on - strand at 288.593 kb on + strand at 288.633 kb on + strand, within AMB_RS01310 at 288.714 kb on + strand, within AMB_RS01310 at 288.714 kb on + strand, within AMB_RS01310 at 288.714 kb on + strand, within AMB_RS01310 at 288.715 kb on - strand, within AMB_RS01310 at 288.715 kb on - strand, within AMB_RS01310 at 288.783 kb on + strand, within AMB_RS01310 at 288.783 kb on + strand, within AMB_RS01310 at 288.783 kb on + strand, within AMB_RS01310 at 288.783 kb on + strand, within AMB_RS01310 at 288.783 kb on + strand, within AMB_RS01310 at 288.784 kb on - strand, within AMB_RS01310 at 289.211 kb on - strand, within AMB_RS01310 at 289.218 kb on + strand, within AMB_RS01310 at 289.218 kb on + strand, within AMB_RS01310 at 289.218 kb on + strand, within AMB_RS01310 at 289.218 kb on + strand, within AMB_RS01310 at 289.219 kb on - strand, within AMB_RS01310 at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.329 kb on + strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.330 kb on - strand at 289.334 kb on + strand at 289.334 kb on + strand at 289.335 kb on - strand at 289.335 kb on - strand at 289.335 kb on - strand at 289.335 kb on - strand at 289.335 kb on - strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.383 kb on + strand at 289.384 kb on - strand at 289.384 kb on - strand at 289.384 kb on - strand at 289.525 kb on + strand at 289.526 kb on - strand at 289.526 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_2 remove 287,215 + +0.1 287,215 + -1.3 287,216 - +1.9 287,261 + -1.0 287,262 - -0.4 287,351 + AMB_RS01300 0.16 -0.6 287,351 + AMB_RS01300 0.16 -0.6 287,540 + AMB_RS01300 0.35 -0.4 287,540 + AMB_RS01300 0.35 -0.8 287,540 + AMB_RS01300 0.35 -0.4 287,540 + AMB_RS01300 0.35 -0.3 287,540 + AMB_RS01300 0.35 -0.5 287,540 + AMB_RS01300 0.35 +0.4 287,540 + AMB_RS01300 0.35 -2.9 287,540 + AMB_RS01300 0.35 +0.5 287,540 + AMB_RS01300 0.35 -0.0 287,540 + AMB_RS01300 0.35 -1.0 287,540 + AMB_RS01300 0.35 -0.6 287,540 + AMB_RS01300 0.35 -1.0 287,541 - AMB_RS01300 0.36 -0.9 287,543 + AMB_RS01300 0.36 +0.3 287,543 + AMB_RS01300 0.36 -2.7 287,543 + AMB_RS01300 0.36 -0.2 287,543 + AMB_RS01300 0.36 +0.3 287,543 + AMB_RS01300 0.36 -0.1 287,543 + AMB_RS01300 0.36 +0.3 287,543 + AMB_RS01300 0.36 -0.3 287,543 + AMB_RS01300 0.36 -0.5 287,543 + AMB_RS01300 0.36 +0.1 287,543 + AMB_RS01300 0.36 -0.0 287,543 + AMB_RS01300 0.36 -2.3 287,544 - AMB_RS01300 0.36 +1.6 287,544 - AMB_RS01300 0.36 -0.2 287,544 - AMB_RS01300 0.36 -0.1 287,709 - AMB_RS01300 0.53 +0.5 287,709 - AMB_RS01300 0.53 +0.6 287,709 - AMB_RS01300 0.53 -0.1 287,891 + AMB_RS01300 0.71 -0.8 287,891 + AMB_RS01300 0.71 -0.5 287,891 + AMB_RS01300 0.71 -1.2 287,891 + AMB_RS01300 0.71 -1.1 287,891 + AMB_RS01300 0.71 -0.4 287,891 + AMB_RS01300 0.71 -0.6 287,891 + AMB_RS01300 0.71 +0.8 287,892 - AMB_RS01300 0.71 -0.5 288,134 + -1.0 288,134 + -2.8 288,134 + -1.0 288,134 + -4.8 288,135 - -0.3 288,176 + -0.5 288,176 + -2.0 288,176 + -1.5 288,176 + -2.2 288,177 - +0.0 288,188 + -0.2 288,188 + +0.7 288,188 + -3.2 288,188 + -0.8 288,188 + +0.2 288,189 - +0.0 288,189 - +0.2 288,219 - -0.0 288,262 + AMB_RS01305 0.19 -0.6 288,263 - AMB_RS01305 0.20 -0.1 288,263 - AMB_RS01305 0.20 -0.1 288,427 + AMB_RS01305 0.66 -0.0 288,427 + AMB_RS01305 0.66 -1.2 288,427 + AMB_RS01305 0.66 -1.1 288,427 + AMB_RS01305 0.66 -0.3 288,427 + AMB_RS01305 0.66 -0.6 288,427 + AMB_RS01305 0.66 -0.7 288,428 - AMB_RS01305 0.66 +1.0 288,454 + AMB_RS01305 0.74 -1.2 288,454 + AMB_RS01305 0.74 -0.7 288,454 + AMB_RS01305 0.74 -0.6 288,454 + AMB_RS01305 0.74 -0.8 288,454 + AMB_RS01305 0.74 -0.7 288,454 + AMB_RS01305 0.74 -1.8 288,454 + AMB_RS01305 0.74 -0.1 288,454 + AMB_RS01305 0.74 -0.3 288,454 + AMB_RS01305 0.74 -0.5 288,454 + AMB_RS01305 0.74 -0.9 288,455 - AMB_RS01305 0.74 +0.2 288,465 + AMB_RS01305 0.77 -1.5 288,465 + AMB_RS01305 0.77 -1.2 288,465 + AMB_RS01305 0.77 -0.8 288,465 + AMB_RS01305 0.77 +0.2 288,465 + AMB_RS01305 0.77 -1.5 288,465 + AMB_RS01305 0.77 -2.0 288,465 + AMB_RS01305 0.77 -1.1 288,465 + AMB_RS01305 0.77 -1.1 288,465 + AMB_RS01305 0.77 -1.1 288,465 + AMB_RS01305 0.77 -0.7 288,465 + AMB_RS01305 0.77 -1.8 288,466 - AMB_RS01305 0.77 -0.5 288,466 - AMB_RS01305 0.77 -0.2 288,544 + -0.5 288,544 + -0.3 288,544 + +0.4 288,544 + -0.5 288,544 + +0.2 288,544 + +0.3 288,544 + -0.4 288,545 - -0.2 288,545 - +0.1 288,545 - -0.0 288,545 - -0.6 288,545 - -1.6 288,545 - -0.1 288,591 + -0.8 288,591 + +0.2 288,591 + -0.1 288,591 + -0.4 288,592 - -1.0 288,593 + -0.4 288,633 + AMB_RS01310 0.10 -1.2 288,714 + AMB_RS01310 0.20 -0.2 288,714 + AMB_RS01310 0.20 -0.8 288,714 + AMB_RS01310 0.20 -0.5 288,715 - AMB_RS01310 0.20 -0.0 288,715 - AMB_RS01310 0.20 -1.0 288,783 + AMB_RS01310 0.28 +0.2 288,783 + AMB_RS01310 0.28 +2.0 288,783 + AMB_RS01310 0.28 -0.3 288,783 + AMB_RS01310 0.28 -0.8 288,783 + AMB_RS01310 0.28 -0.1 288,784 - AMB_RS01310 0.28 +0.1 289,211 - AMB_RS01310 0.79 +0.2 289,218 + AMB_RS01310 0.80 -1.1 289,218 + AMB_RS01310 0.80 -0.8 289,218 + AMB_RS01310 0.80 -0.9 289,218 + AMB_RS01310 0.80 -0.6 289,219 - AMB_RS01310 0.80 +0.7 289,329 + -1.9 289,329 + -1.1 289,329 + -1.1 289,329 + -2.3 289,329 + -1.2 289,329 + -0.0 289,329 + -0.2 289,329 + -1.9 289,329 + -1.8 289,329 + -0.9 289,329 + -1.5 289,329 + -1.5 289,329 + -1.5 289,329 + -0.0 289,329 + -2.8 289,329 + -0.6 289,329 + -1.9 289,329 + -2.6 289,329 + -1.9 289,329 + -0.9 289,329 + +0.4 289,329 + -0.7 289,329 + -1.6 289,329 + -1.7 289,329 + -1.1 289,329 + -2.2 289,329 + -0.9 289,330 - -0.9 289,330 - -0.0 289,330 - -0.8 289,330 - -1.2 289,330 - -0.9 289,330 - -0.2 289,330 - +0.8 289,330 - +0.2 289,334 + -0.7 289,334 + -1.8 289,335 - +0.0 289,335 - -0.7 289,335 - +0.1 289,335 - +0.3 289,335 - +0.1 289,383 + -0.7 289,383 + -0.2 289,383 + -0.8 289,383 + -1.9 289,383 + -1.7 289,383 + -1.0 289,383 + -1.9 289,383 + -1.4 289,383 + -1.9 289,384 - -0.0 289,384 - -0.7 289,384 - +0.4 289,525 + +0.2 289,526 - -0.0 289,526 - -0.7
Or see this region's nucleotide sequence