Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02825

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02820 and ABIE40_RS02825 are separated by 14 nucleotidesABIE40_RS02825 and ABIE40_RS02830 are separated by 5 nucleotidesABIE40_RS02830 and ABIE40_RS02835 are separated by 94 nucleotides ABIE40_RS02820: ABIE40_RS02820 - helix-turn-helix transcriptional regulator, at 557,391 to 558,095 _RS02820 ABIE40_RS02825: ABIE40_RS02825 - response regulator, at 558,110 to 558,547 _RS02825 ABIE40_RS02830: ABIE40_RS02830 - ATP-binding protein, at 558,553 to 559,255 _RS02830 ABIE40_RS02835: ABIE40_RS02835 - protein translocase subunit SecD, at 559,350 to 561,905 _RS02835 Position (kb) 558 559Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 557.139 kb on - strandat 557.172 kb on - strandat 557.175 kb on + strandat 557.176 kb on - strandat 557.243 kb on + strandat 557.256 kb on - strandat 557.276 kb on + strandat 557.327 kb on + strandat 557.327 kb on + strandat 557.327 kb on + strandat 557.327 kb on + strandat 557.327 kb on + strandat 557.328 kb on - strandat 557.328 kb on - strandat 557.328 kb on - strandat 557.330 kb on - strandat 557.378 kb on + strandat 557.378 kb on + strandat 557.379 kb on - strandat 557.379 kb on - strandat 557.420 kb on + strandat 557.420 kb on + strandat 557.420 kb on + strandat 557.420 kb on + strandat 557.474 kb on + strand, within ABIE40_RS02820at 557.475 kb on - strand, within ABIE40_RS02820at 557.475 kb on - strand, within ABIE40_RS02820at 557.494 kb on - strand, within ABIE40_RS02820at 557.494 kb on - strand, within ABIE40_RS02820at 557.698 kb on - strand, within ABIE40_RS02820at 557.779 kb on - strand, within ABIE40_RS02820at 557.779 kb on - strand, within ABIE40_RS02820at 557.871 kb on + strand, within ABIE40_RS02820at 557.871 kb on + strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.996 kb on + strand, within ABIE40_RS02820at 557.997 kb on - strand, within ABIE40_RS02820at 557.997 kb on - strand, within ABIE40_RS02820at 557.997 kb on - strand, within ABIE40_RS02820at 557.997 kb on - strand, within ABIE40_RS02820at 558.011 kb on + strand, within ABIE40_RS02820at 558.012 kb on - strand, within ABIE40_RS02820at 558.056 kb on + strandat 558.056 kb on + strandat 558.056 kb on + strandat 558.056 kb on + strandat 558.056 kb on + strandat 558.056 kb on + strandat 558.056 kb on + strandat 558.057 kb on - strandat 558.057 kb on - strandat 558.057 kb on - strandat 558.057 kb on - strandat 558.057 kb on - strandat 558.057 kb on - strandat 558.057 kb on - strandat 558.067 kb on + strandat 558.233 kb on + strand, within ABIE40_RS02825at 558.234 kb on - strand, within ABIE40_RS02825at 558.234 kb on - strand, within ABIE40_RS02825at 558.363 kb on - strand, within ABIE40_RS02825at 558.364 kb on + strand, within ABIE40_RS02825at 558.364 kb on + strand, within ABIE40_RS02825at 558.365 kb on - strand, within ABIE40_RS02825at 558.395 kb on - strand, within ABIE40_RS02825at 558.407 kb on + strand, within ABIE40_RS02825at 558.408 kb on - strand, within ABIE40_RS02825at 558.482 kb on + strand, within ABIE40_RS02825at 558.482 kb on + strand, within ABIE40_RS02825at 558.483 kb on - strand, within ABIE40_RS02825at 558.483 kb on - strand, within ABIE40_RS02825at 558.483 kb on - strand, within ABIE40_RS02825at 558.483 kb on - strand, within ABIE40_RS02825at 558.483 kb on - strand, within ABIE40_RS02825at 558.483 kb on - strand, within ABIE40_RS02825at 558.483 kb on - strand, within ABIE40_RS02825at 558.483 kb on - strand, within ABIE40_RS02825at 558.498 kb on - strand, within ABIE40_RS02825at 558.498 kb on - strand, within ABIE40_RS02825at 558.498 kb on - strand, within ABIE40_RS02825at 558.506 kb on + strandat 558.506 kb on + strandat 558.506 kb on + strandat 558.506 kb on + strandat 558.536 kb on + strandat 558.537 kb on - strandat 558.541 kb on + strandat 558.541 kb on + strandat 558.541 kb on + strandat 558.541 kb on + strandat 558.541 kb on + strandat 558.541 kb on + strandat 558.541 kb on - strandat 558.542 kb on - strandat 558.542 kb on - strandat 558.542 kb on - strandat 558.542 kb on - strandat 558.624 kb on + strand, within ABIE40_RS02830at 558.624 kb on + strand, within ABIE40_RS02830at 558.625 kb on - strand, within ABIE40_RS02830at 558.796 kb on + strand, within ABIE40_RS02830at 558.847 kb on + strand, within ABIE40_RS02830at 558.847 kb on + strand, within ABIE40_RS02830at 558.848 kb on - strand, within ABIE40_RS02830at 558.913 kb on + strand, within ABIE40_RS02830at 558.913 kb on + strand, within ABIE40_RS02830at 558.913 kb on + strand, within ABIE40_RS02830at 558.914 kb on - strand, within ABIE40_RS02830at 558.914 kb on - strand, within ABIE40_RS02830at 558.914 kb on - strand, within ABIE40_RS02830at 559.143 kb on + strand, within ABIE40_RS02830at 559.144 kb on - strand, within ABIE40_RS02830at 559.144 kb on - strand, within ABIE40_RS02830at 559.144 kb on - strand, within ABIE40_RS02830at 559.144 kb on - strand, within ABIE40_RS02830at 559.144 kb on - strand, within ABIE40_RS02830at 559.153 kb on + strand, within ABIE40_RS02830at 559.219 kb on + strandat 559.261 kb on + strandat 559.262 kb on - strandat 559.262 kb on - strandat 559.283 kb on + strandat 559.288 kb on + strandat 559.289 kb on - strandat 559.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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557,139 - +0.6
557,172 - -0.6
557,175 + -1.6
557,176 - +0.2
557,243 + -1.5
557,256 - -1.6
557,276 + +0.3
557,327 + +1.5
557,327 + +0.2
557,327 + +0.4
557,327 + -0.1
557,327 + +0.0
557,328 - +0.7
557,328 - -0.3
557,328 - +0.4
557,330 - -0.4
557,378 + -0.3
557,378 + -0.6
557,379 - +0.6
557,379 - -3.4
557,420 + -0.5
557,420 + -0.4
557,420 + -0.1
557,420 + +0.7
557,474 + ABIE40_RS02820 0.12 -0.3
557,475 - ABIE40_RS02820 0.12 -0.2
557,475 - ABIE40_RS02820 0.12 +0.0
557,494 - ABIE40_RS02820 0.15 -0.2
557,494 - ABIE40_RS02820 0.15 -0.2
557,698 - ABIE40_RS02820 0.44 -1.1
557,779 - ABIE40_RS02820 0.55 -0.5
557,779 - ABIE40_RS02820 0.55 -0.1
557,871 + ABIE40_RS02820 0.68 -3.9
557,871 + ABIE40_RS02820 0.68 -1.8
557,872 - ABIE40_RS02820 0.68 -0.2
557,872 - ABIE40_RS02820 0.68 -0.0
557,872 - ABIE40_RS02820 0.68 -0.8
557,872 - ABIE40_RS02820 0.68 -0.6
557,872 - ABIE40_RS02820 0.68 +0.2
557,872 - ABIE40_RS02820 0.68 +0.3
557,872 - ABIE40_RS02820 0.68 +0.3
557,996 + ABIE40_RS02820 0.86 +0.8
557,997 - ABIE40_RS02820 0.86 -0.3
557,997 - ABIE40_RS02820 0.86 +0.3
557,997 - ABIE40_RS02820 0.86 +0.9
557,997 - ABIE40_RS02820 0.86 -0.5
558,011 + ABIE40_RS02820 0.88 -0.6
558,012 - ABIE40_RS02820 0.88 -1.2
558,056 + +0.5
558,056 + -0.4
558,056 + +0.7
558,056 + +0.2
558,056 + -0.1
558,056 + -0.1
558,056 + +0.2
558,057 - +0.3
558,057 - +0.3
558,057 - -1.7
558,057 - +0.6
558,057 - +0.2
558,057 - -0.3
558,057 - -0.0
558,067 + -0.2
558,233 + ABIE40_RS02825 0.28 +0.9
558,234 - ABIE40_RS02825 0.28 +1.2
558,234 - ABIE40_RS02825 0.28 -0.2
558,363 - ABIE40_RS02825 0.58 +0.5
558,364 + ABIE40_RS02825 0.58 +0.1
558,364 + ABIE40_RS02825 0.58 -0.0
558,365 - ABIE40_RS02825 0.58 +0.4
558,395 - ABIE40_RS02825 0.65 +0.1
558,407 + ABIE40_RS02825 0.68 +1.2
558,408 - ABIE40_RS02825 0.68 +0.8
558,482 + ABIE40_RS02825 0.85 +0.3
558,482 + ABIE40_RS02825 0.85 -0.1
558,483 - ABIE40_RS02825 0.85 +0.4
558,483 - ABIE40_RS02825 0.85 +1.0
558,483 - ABIE40_RS02825 0.85 -2.6
558,483 - ABIE40_RS02825 0.85 -0.1
558,483 - ABIE40_RS02825 0.85 -2.7
558,483 - ABIE40_RS02825 0.85 -0.9
558,483 - ABIE40_RS02825 0.85 +4.3
558,483 - ABIE40_RS02825 0.85 -1.0
558,498 - ABIE40_RS02825 0.89 -0.6
558,498 - ABIE40_RS02825 0.89 -0.6
558,498 - ABIE40_RS02825 0.89 -0.1
558,506 + +3.4
558,506 + -0.2
558,506 + +2.2
558,506 + -0.3
558,536 + -0.1
558,537 - +0.3
558,541 + +1.6
558,541 + +0.3
558,541 + -0.2
558,541 + -0.5
558,541 + +1.4
558,541 + -0.2
558,541 - -1.1
558,542 - +1.4
558,542 - +1.1
558,542 - -0.8
558,542 - +0.4
558,624 + ABIE40_RS02830 0.10 +1.1
558,624 + ABIE40_RS02830 0.10 +0.8
558,625 - ABIE40_RS02830 0.10 +0.3
558,796 + ABIE40_RS02830 0.35 -0.0
558,847 + ABIE40_RS02830 0.42 +1.0
558,847 + ABIE40_RS02830 0.42 +0.2
558,848 - ABIE40_RS02830 0.42 +1.4
558,913 + ABIE40_RS02830 0.51 -0.2
558,913 + ABIE40_RS02830 0.51 +0.3
558,913 + ABIE40_RS02830 0.51 -0.6
558,914 - ABIE40_RS02830 0.51 +0.5
558,914 - ABIE40_RS02830 0.51 +1.0
558,914 - ABIE40_RS02830 0.51 +0.0
559,143 + ABIE40_RS02830 0.84 +1.2
559,144 - ABIE40_RS02830 0.84 +1.3
559,144 - ABIE40_RS02830 0.84 +0.3
559,144 - ABIE40_RS02830 0.84 +0.3
559,144 - ABIE40_RS02830 0.84 +0.6
559,144 - ABIE40_RS02830 0.84 +0.1
559,153 + ABIE40_RS02830 0.85 -0.2
559,219 + +0.9
559,261 + -1.3
559,262 - +0.6
559,262 - -1.7
559,283 + -0.4
559,288 + -0.3
559,289 - +0.3
559,289 - -0.1

Or see this region's nucleotide sequence