Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28030 and ABID97_RS28035 are separated by 219 nucleotides ABID97_RS28035 and ABID97_RS28040 are separated by 82 nucleotides
ABID97_RS28030: ABID97_RS28030 - branched-chain amino acid ABC transporter permease, at 523,727 to 524,575
_RS28030
ABID97_RS28035: ABID97_RS28035 - fumarylacetoacetate hydrolase family protein, at 524,795 to 525,589
_RS28035
ABID97_RS28040: ABID97_RS28040 - lysophospholipase, at 525,672 to 526,727
_RS28040
Position (kb) 524
525
526 Strain fitness (log2 ratio) -1
0
1 at 524.318 kb on + strand, within ABID97_RS28030 at 524.418 kb on + strand, within ABID97_RS28030 at 524.702 kb on + strand at 524.703 kb on - strand at 524.979 kb on - strand, within ABID97_RS28035 at 524.984 kb on + strand, within ABID97_RS28035 at 524.985 kb on - strand, within ABID97_RS28035 at 525.195 kb on - strand, within ABID97_RS28035 at 525.275 kb on + strand, within ABID97_RS28035 at 525.419 kb on + strand, within ABID97_RS28035 at 525.420 kb on - strand, within ABID97_RS28035 at 525.432 kb on - strand, within ABID97_RS28035 at 525.920 kb on - strand, within ABID97_RS28040 at 526.360 kb on + strand, within ABID97_RS28040 at 526.361 kb on - strand, within ABID97_RS28040 at 526.388 kb on - strand, within ABID97_RS28040 at 526.510 kb on + strand, within ABID97_RS28040 at 526.510 kb on + strand, within ABID97_RS28040 at 526.511 kb on - strand, within ABID97_RS28040 at 526.511 kb on - strand, within ABID97_RS28040 at 526.511 kb on - strand, within ABID97_RS28040 at 526.511 kb on - strand, within ABID97_RS28040
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 524,318 + ABID97_RS28030 0.70 +0.5 524,418 + ABID97_RS28030 0.81 +0.3 524,702 + +1.0 524,703 - -0.1 524,979 - ABID97_RS28035 0.23 +0.3 524,984 + ABID97_RS28035 0.24 +1.1 524,985 - ABID97_RS28035 0.24 +0.0 525,195 - ABID97_RS28035 0.50 +0.6 525,275 + ABID97_RS28035 0.60 +0.1 525,419 + ABID97_RS28035 0.78 +0.3 525,420 - ABID97_RS28035 0.79 -0.1 525,432 - ABID97_RS28035 0.80 +0.3 525,920 - ABID97_RS28040 0.23 -0.2 526,360 + ABID97_RS28040 0.65 +0.1 526,361 - ABID97_RS28040 0.65 +0.3 526,388 - ABID97_RS28040 0.68 -0.3 526,510 + ABID97_RS28040 0.79 +0.0 526,510 + ABID97_RS28040 0.79 +1.5 526,511 - ABID97_RS28040 0.79 +0.1 526,511 - ABID97_RS28040 0.79 +0.2 526,511 - ABID97_RS28040 0.79 -0.2 526,511 - ABID97_RS28040 0.79 -0.5
Or see this region's nucleotide sequence