Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27760

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27755 and ABID97_RS27760 are separated by 49 nucleotidesABID97_RS27760 and ABID97_RS27765 are separated by 136 nucleotidesABID97_RS27765 and ABID97_RS27770 overlap by 20 nucleotides ABID97_RS27755: ABID97_RS27755 - tripartite tricarboxylate transporter substrate binding protein, at 470,296 to 471,312 _RS27755 ABID97_RS27760: ABID97_RS27760 - DUF3237 domain-containing protein, at 471,362 to 471,850 _RS27760 ABID97_RS27765: ABID97_RS27765 - LuxR C-terminal-related transcriptional regulator, at 471,987 to 472,757 _RS27765 ABID97_RS27770: ABID97_RS27770 - glutathione S-transferase family protein, at 472,738 to 473,415 _RS27770 Position (kb) 471 472Strain fitness (log2 ratio) -1 0 1at 470.717 kb on + strand, within ABID97_RS27755at 470.718 kb on - strand, within ABID97_RS27755at 470.718 kb on - strand, within ABID97_RS27755at 470.718 kb on - strand, within ABID97_RS27755at 470.943 kb on - strand, within ABID97_RS27755at 471.576 kb on + strand, within ABID97_RS27760at 472.282 kb on - strand, within ABID97_RS27765at 472.282 kb on - strand, within ABID97_RS27765

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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470,717 + ABID97_RS27755 0.41 +0.4
470,718 - ABID97_RS27755 0.41 +0.4
470,718 - ABID97_RS27755 0.41 -0.0
470,718 - ABID97_RS27755 0.41 +0.1
470,943 - ABID97_RS27755 0.64 +0.3
471,576 + ABID97_RS27760 0.44 -1.1
472,282 - ABID97_RS27765 0.38 +0.5
472,282 - ABID97_RS27765 0.38 +0.1

Or see this region's nucleotide sequence