Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03630

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03625 and ABID97_RS03630 are separated by 63 nucleotidesABID97_RS03630 and ABID97_RS03635 are separated by 21 nucleotides ABID97_RS03625: ABID97_RS03625 - TorF family putative porin, at 745,957 to 746,782 _RS03625 ABID97_RS03630: ABID97_RS03630 - P-II family nitrogen regulator, at 746,846 to 747,184 _RS03630 ABID97_RS03635: ABID97_RS03635 - ammonium transporter, at 747,206 to 748,732 _RS03635 Position (kb) 746 747 748Strain fitness (log2 ratio) -2 -1 0 1 2at 745.929 kb on - strandat 745.929 kb on - strandat 745.968 kb on + strandat 745.969 kb on - strandat 746.063 kb on + strand, within ABID97_RS03625at 746.063 kb on + strand, within ABID97_RS03625at 746.064 kb on - strand, within ABID97_RS03625at 746.064 kb on - strand, within ABID97_RS03625at 746.064 kb on - strand, within ABID97_RS03625at 746.064 kb on - strand, within ABID97_RS03625at 746.180 kb on + strand, within ABID97_RS03625at 746.243 kb on + strand, within ABID97_RS03625at 746.243 kb on + strand, within ABID97_RS03625at 746.244 kb on - strand, within ABID97_RS03625at 746.244 kb on - strand, within ABID97_RS03625at 746.252 kb on + strand, within ABID97_RS03625at 746.252 kb on + strand, within ABID97_RS03625at 746.300 kb on + strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.306 kb on + strand, within ABID97_RS03625at 746.306 kb on + strand, within ABID97_RS03625at 746.306 kb on + strand, within ABID97_RS03625at 746.307 kb on - strand, within ABID97_RS03625at 746.394 kb on - strand, within ABID97_RS03625at 746.417 kb on + strand, within ABID97_RS03625at 746.418 kb on - strand, within ABID97_RS03625at 746.489 kb on + strand, within ABID97_RS03625at 746.583 kb on - strand, within ABID97_RS03625at 746.583 kb on - strand, within ABID97_RS03625at 746.583 kb on - strand, within ABID97_RS03625at 746.583 kb on - strand, within ABID97_RS03625at 746.591 kb on + strand, within ABID97_RS03625at 746.592 kb on - strand, within ABID97_RS03625at 746.609 kb on + strand, within ABID97_RS03625at 746.609 kb on + strand, within ABID97_RS03625at 746.672 kb on + strand, within ABID97_RS03625at 746.672 kb on + strand, within ABID97_RS03625at 746.673 kb on - strand, within ABID97_RS03625at 746.673 kb on - strand, within ABID97_RS03625at 746.733 kb on - strandat 746.982 kb on - strand, within ABID97_RS03630at 746.996 kb on + strand, within ABID97_RS03630at 746.997 kb on - strand, within ABID97_RS03630at 746.997 kb on - strand, within ABID97_RS03630at 747.126 kb on - strand, within ABID97_RS03630at 747.491 kb on + strand, within ABID97_RS03635at 747.581 kb on + strand, within ABID97_RS03635at 747.581 kb on + strand, within ABID97_RS03635at 747.581 kb on + strand, within ABID97_RS03635at 747.582 kb on - strand, within ABID97_RS03635at 747.710 kb on + strand, within ABID97_RS03635at 747.710 kb on + strand, within ABID97_RS03635at 747.710 kb on + strand, within ABID97_RS03635at 747.710 kb on + strand, within ABID97_RS03635at 747.710 kb on + strand, within ABID97_RS03635at 747.711 kb on - strand, within ABID97_RS03635at 747.848 kb on + strand, within ABID97_RS03635at 747.848 kb on + strand, within ABID97_RS03635at 747.848 kb on + strand, within ABID97_RS03635at 747.849 kb on - strand, within ABID97_RS03635at 747.849 kb on - strand, within ABID97_RS03635at 747.897 kb on - strand, within ABID97_RS03635

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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745,929 - +0.5
745,929 - +1.3
745,968 + +0.1
745,969 - +0.2
746,063 + ABID97_RS03625 0.13 +1.9
746,063 + ABID97_RS03625 0.13 +0.4
746,064 - ABID97_RS03625 0.13 +0.6
746,064 - ABID97_RS03625 0.13 -2.0
746,064 - ABID97_RS03625 0.13 -0.1
746,064 - ABID97_RS03625 0.13 +0.2
746,180 + ABID97_RS03625 0.27 +0.3
746,243 + ABID97_RS03625 0.35 +0.1
746,243 + ABID97_RS03625 0.35 -0.2
746,244 - ABID97_RS03625 0.35 +0.9
746,244 - ABID97_RS03625 0.35 +0.2
746,252 + ABID97_RS03625 0.36 -0.6
746,252 + ABID97_RS03625 0.36 +0.5
746,300 + ABID97_RS03625 0.42 +0.1
746,301 - ABID97_RS03625 0.42 +0.1
746,301 - ABID97_RS03625 0.42 -0.1
746,301 - ABID97_RS03625 0.42 +0.1
746,301 - ABID97_RS03625 0.42 +0.2
746,301 - ABID97_RS03625 0.42 -0.4
746,301 - ABID97_RS03625 0.42 -0.8
746,306 + ABID97_RS03625 0.42 +0.6
746,306 + ABID97_RS03625 0.42 +0.7
746,306 + ABID97_RS03625 0.42 -0.8
746,307 - ABID97_RS03625 0.42 -0.1
746,394 - ABID97_RS03625 0.53 +0.4
746,417 + ABID97_RS03625 0.56 -0.1
746,418 - ABID97_RS03625 0.56 -0.2
746,489 + ABID97_RS03625 0.64 +0.5
746,583 - ABID97_RS03625 0.76 +0.4
746,583 - ABID97_RS03625 0.76 +0.3
746,583 - ABID97_RS03625 0.76 +0.2
746,583 - ABID97_RS03625 0.76 -0.2
746,591 + ABID97_RS03625 0.77 -0.4
746,592 - ABID97_RS03625 0.77 -0.1
746,609 + ABID97_RS03625 0.79 +0.2
746,609 + ABID97_RS03625 0.79 +0.3
746,672 + ABID97_RS03625 0.87 +0.5
746,672 + ABID97_RS03625 0.87 +0.3
746,673 - ABID97_RS03625 0.87 -0.7
746,673 - ABID97_RS03625 0.87 -0.3
746,733 - +0.1
746,982 - ABID97_RS03630 0.40 -0.4
746,996 + ABID97_RS03630 0.44 -1.4
746,997 - ABID97_RS03630 0.45 -0.9
746,997 - ABID97_RS03630 0.45 -1.6
747,126 - ABID97_RS03630 0.83 -0.9
747,491 + ABID97_RS03635 0.19 -0.2
747,581 + ABID97_RS03635 0.25 +0.0
747,581 + ABID97_RS03635 0.25 +0.2
747,581 + ABID97_RS03635 0.25 +0.2
747,582 - ABID97_RS03635 0.25 -0.4
747,710 + ABID97_RS03635 0.33 +1.6
747,710 + ABID97_RS03635 0.33 +1.5
747,710 + ABID97_RS03635 0.33 -0.7
747,710 + ABID97_RS03635 0.33 -0.9
747,710 + ABID97_RS03635 0.33 +0.0
747,711 - ABID97_RS03635 0.33 +0.8
747,848 + ABID97_RS03635 0.42 -0.2
747,848 + ABID97_RS03635 0.42 +0.1
747,848 + ABID97_RS03635 0.42 +0.4
747,849 - ABID97_RS03635 0.42 +0.6
747,849 - ABID97_RS03635 0.42 +0.3
747,897 - ABID97_RS03635 0.45 +0.1

Or see this region's nucleotide sequence