Strain Fitness in Escherichia coli BW25113 around b2297

Experiment: D-Galacturonic Acid (C) MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntackA and pta are separated by 74 nucleotidespta and yfcC are separated by 189 nucleotides b2296: ackA - acetate kinase (NCBI), at 2,411,492 to 2,412,694 ackA b2297: pta - phosphate acetyltransferase (NCBI), at 2,412,769 to 2,414,913 pta b2298: yfcC - putative S-transferase (VIMSS), at 2,415,103 to 2,416,623 yfcC Position (kb) 2412 2413 2414 2415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2414.132 kb on - strand, within ptaat 2415.137 kb on - strandat 2415.230 kb on + strandat 2415.230 kb on + strandat 2415.251 kb on - strandat 2415.285 kb on - strand, within yfcCat 2415.285 kb on - strand, within yfcCat 2415.345 kb on + strand, within yfcCat 2415.658 kb on + strand, within yfcCat 2415.679 kb on + strand, within yfcCat 2415.679 kb on + strand, within yfcCat 2415.692 kb on + strand, within yfcCat 2415.812 kb on - strand, within yfcCat 2415.835 kb on + strand, within yfcCat 2415.846 kb on + strand, within yfcCat 2415.847 kb on + strand, within yfcCat 2415.860 kb on - strand, within yfcCat 2415.860 kb on - strand, within yfcCat 2415.891 kb on + strand, within yfcC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) MOPS
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2,414,132 - pta b2297 0.64 -2.8
2,415,137 - +0.0
2,415,230 + +1.9
2,415,230 + +0.3
2,415,251 - +0.1
2,415,285 - yfcC b2298 0.12 -0.0
2,415,285 - yfcC b2298 0.12 -0.2
2,415,345 + yfcC b2298 0.16 -0.2
2,415,658 + yfcC b2298 0.36 +0.1
2,415,679 + yfcC b2298 0.38 -1.0
2,415,679 + yfcC b2298 0.38 -0.0
2,415,692 + yfcC b2298 0.39 -0.0
2,415,812 - yfcC b2298 0.47 +0.7
2,415,835 + yfcC b2298 0.48 -0.0
2,415,846 + yfcC b2298 0.49 -0.1
2,415,847 + yfcC b2298 0.49 -0.1
2,415,860 - yfcC b2298 0.50 -0.3
2,415,860 - yfcC b2298 0.50 +1.1
2,415,891 + yfcC b2298 0.52 -1.8

Or see this region's nucleotide sequence