Strain Fitness in Escherichia coli BW25113 around b2296

Experiment: D-Galacturonic Acid (C) MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb2294 and yfbV are separated by 82 nucleotidesyfbV and ackA are separated by 337 nucleotidesackA and pta are separated by 74 nucleotides b2294: b2294 - orf, hypothetical protein (VIMSS), at 2,410,122 to 2,410,616 b2294 b2295: yfbV - hypothetical protein (NCBI), at 2,410,699 to 2,411,154 yfbV b2296: ackA - acetate kinase (NCBI), at 2,411,492 to 2,412,694 ackA b2297: pta - phosphate acetyltransferase (NCBI), at 2,412,769 to 2,414,913 pta Position (kb) 2411 2412 2413Strain fitness (log2 ratio) -1 0 1at 2410.508 kb on + strand, within b2294at 2410.538 kb on - strand, within b2294at 2410.538 kb on - strand, within b2294at 2410.550 kb on + strand, within b2294at 2410.561 kb on + strand, within b2294at 2410.567 kb on + strandat 2410.567 kb on + strandat 2410.618 kb on + strandat 2410.623 kb on + strandat 2410.636 kb on - strandat 2410.636 kb on - strandat 2410.673 kb on + strandat 2410.673 kb on + strandat 2410.726 kb on - strandat 2410.765 kb on - strand, within yfbVat 2410.808 kb on + strand, within yfbVat 2410.808 kb on + strand, within yfbVat 2410.811 kb on - strand, within yfbVat 2410.858 kb on + strand, within yfbVat 2410.864 kb on + strand, within yfbVat 2410.866 kb on - strand, within yfbVat 2410.886 kb on + strand, within yfbVat 2410.934 kb on - strand, within yfbVat 2410.946 kb on - strand, within yfbVat 2410.948 kb on + strand, within yfbVat 2411.001 kb on + strand, within yfbVat 2411.113 kb on - strandat 2411.138 kb on - strandat 2411.174 kb on - strandat 2411.285 kb on - strandat 2411.290 kb on + strandat 2411.317 kb on + strandat 2411.398 kb on + strandat 2411.398 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) MOPS
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2,410,508 + b2294 b2294 0.78 +0.2
2,410,538 - b2294 b2294 0.84 -0.8
2,410,538 - b2294 b2294 0.84 +0.2
2,410,550 + b2294 b2294 0.86 +0.2
2,410,561 + b2294 b2294 0.89 +0.4
2,410,567 + +0.1
2,410,567 + -0.1
2,410,618 + +0.3
2,410,623 + -0.7
2,410,636 - +0.6
2,410,636 - +1.6
2,410,673 + +0.7
2,410,673 + +0.3
2,410,726 - -0.1
2,410,765 - yfbV b2295 0.14 -0.0
2,410,808 + yfbV b2295 0.24 +0.4
2,410,808 + yfbV b2295 0.24 -0.5
2,410,811 - yfbV b2295 0.25 -0.3
2,410,858 + yfbV b2295 0.35 +0.1
2,410,864 + yfbV b2295 0.36 +0.1
2,410,866 - yfbV b2295 0.37 +0.4
2,410,886 + yfbV b2295 0.41 -0.4
2,410,934 - yfbV b2295 0.52 +0.4
2,410,946 - yfbV b2295 0.54 +0.3
2,410,948 + yfbV b2295 0.55 -0.1
2,411,001 + yfbV b2295 0.66 -0.6
2,411,113 - +1.0
2,411,138 - +0.5
2,411,174 - -0.4
2,411,285 - -1.1
2,411,290 + -0.3
2,411,317 + +0.4
2,411,398 + -0.4
2,411,398 + +0.6

Or see this region's nucleotide sequence