Strain Fitness in Pseudomonas sp. RS175 around PFR28_05084

Experiment: L-Isoleucine carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_05083 and PFR28_05084 are separated by 103 nucleotidesPFR28_05084 and PFR28_05085 are separated by 32 nucleotidesPFR28_05085 and PFR28_05086 overlap by 4 nucleotides PFR28_05083: PFR28_05083 - Bifunctional protein HldE, at 5,821,607 to 5,823,028 _05083 PFR28_05084: PFR28_05084 - hypothetical protein, at 5,823,132 to 5,824,097 _05084 PFR28_05085: PFR28_05085 - hypothetical protein, at 5,824,130 to 5,824,942 _05085 PFR28_05086: PFR28_05086 - putative FAD-dependent oxidoreductase, at 5,824,939 to 5,826,114 _05086 Position (kb) 5823 5824 5825Strain fitness (log2 ratio) -2 -1 0 1 2at 5823.022 kb on + strandat 5823.081 kb on + strandat 5823.082 kb on - strandat 5823.087 kb on + strandat 5823.087 kb on + strandat 5823.088 kb on - strandat 5823.088 kb on - strandat 5823.088 kb on - strandat 5823.133 kb on + strandat 5823.133 kb on + strandat 5823.313 kb on + strand, within PFR28_05084at 5823.313 kb on + strand, within PFR28_05084at 5823.313 kb on + strand, within PFR28_05084at 5823.314 kb on - strand, within PFR28_05084at 5823.314 kb on - strand, within PFR28_05084at 5823.314 kb on - strand, within PFR28_05084at 5823.314 kb on - strand, within PFR28_05084at 5823.314 kb on - strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.361 kb on + strand, within PFR28_05084at 5823.362 kb on - strand, within PFR28_05084at 5823.362 kb on - strand, within PFR28_05084at 5823.362 kb on - strand, within PFR28_05084at 5823.362 kb on - strand, within PFR28_05084at 5823.362 kb on - strand, within PFR28_05084at 5823.404 kb on - strand, within PFR28_05084at 5823.520 kb on + strand, within PFR28_05084at 5823.521 kb on - strand, within PFR28_05084at 5823.521 kb on - strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.556 kb on + strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.557 kb on - strand, within PFR28_05084at 5823.671 kb on - strand, within PFR28_05084at 5823.689 kb on + strand, within PFR28_05084at 5823.690 kb on - strand, within PFR28_05084at 5823.866 kb on - strand, within PFR28_05084at 5824.012 kb on + strandat 5824.012 kb on + strandat 5824.012 kb on + strandat 5824.013 kb on - strandat 5824.013 kb on - strandat 5824.013 kb on - strandat 5824.042 kb on + strandat 5824.042 kb on + strandat 5824.043 kb on - strandat 5824.088 kb on + strandat 5824.088 kb on + strandat 5824.089 kb on - strandat 5824.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine carbon 10 mM
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5,823,022 + +0.0
5,823,081 + +2.5
5,823,082 - +0.4
5,823,087 + +0.0
5,823,087 + -0.5
5,823,088 - +0.3
5,823,088 - -1.5
5,823,088 - -0.4
5,823,133 + +0.3
5,823,133 + +0.6
5,823,313 + PFR28_05084 0.19 +0.5
5,823,313 + PFR28_05084 0.19 +1.6
5,823,313 + PFR28_05084 0.19 -0.2
5,823,314 - PFR28_05084 0.19 +0.2
5,823,314 - PFR28_05084 0.19 +0.6
5,823,314 - PFR28_05084 0.19 +0.5
5,823,314 - PFR28_05084 0.19 +2.3
5,823,314 - PFR28_05084 0.19 -2.0
5,823,361 + PFR28_05084 0.24 -0.4
5,823,361 + PFR28_05084 0.24 +1.3
5,823,361 + PFR28_05084 0.24 +0.5
5,823,361 + PFR28_05084 0.24 +0.3
5,823,361 + PFR28_05084 0.24 +1.1
5,823,361 + PFR28_05084 0.24 -0.5
5,823,361 + PFR28_05084 0.24 +0.3
5,823,361 + PFR28_05084 0.24 -0.1
5,823,361 + PFR28_05084 0.24 +0.9
5,823,361 + PFR28_05084 0.24 +0.0
5,823,362 - PFR28_05084 0.24 +0.2
5,823,362 - PFR28_05084 0.24 +0.4
5,823,362 - PFR28_05084 0.24 -0.1
5,823,362 - PFR28_05084 0.24 -0.2
5,823,362 - PFR28_05084 0.24 +0.8
5,823,404 - PFR28_05084 0.28 -2.2
5,823,520 + PFR28_05084 0.40 +0.4
5,823,521 - PFR28_05084 0.40 +1.2
5,823,521 - PFR28_05084 0.40 -0.5
5,823,556 + PFR28_05084 0.44 +1.1
5,823,556 + PFR28_05084 0.44 +0.5
5,823,556 + PFR28_05084 0.44 -1.2
5,823,556 + PFR28_05084 0.44 +1.3
5,823,556 + PFR28_05084 0.44 -2.6
5,823,556 + PFR28_05084 0.44 -0.4
5,823,556 + PFR28_05084 0.44 +0.4
5,823,556 + PFR28_05084 0.44 +0.5
5,823,556 + PFR28_05084 0.44 +0.3
5,823,556 + PFR28_05084 0.44 -0.3
5,823,556 + PFR28_05084 0.44 +0.1
5,823,556 + PFR28_05084 0.44 +0.1
5,823,557 - PFR28_05084 0.44 +1.1
5,823,557 - PFR28_05084 0.44 -0.1
5,823,557 - PFR28_05084 0.44 +0.5
5,823,557 - PFR28_05084 0.44 +0.8
5,823,557 - PFR28_05084 0.44 -1.1
5,823,557 - PFR28_05084 0.44 +0.0
5,823,557 - PFR28_05084 0.44 -0.2
5,823,557 - PFR28_05084 0.44 +0.3
5,823,557 - PFR28_05084 0.44 +0.9
5,823,557 - PFR28_05084 0.44 +0.8
5,823,557 - PFR28_05084 0.44 -0.0
5,823,557 - PFR28_05084 0.44 +0.3
5,823,557 - PFR28_05084 0.44 +0.5
5,823,557 - PFR28_05084 0.44 +1.3
5,823,671 - PFR28_05084 0.56 -0.1
5,823,689 + PFR28_05084 0.58 +0.6
5,823,690 - PFR28_05084 0.58 +0.2
5,823,866 - PFR28_05084 0.76 -0.3
5,824,012 + -0.5
5,824,012 + +0.3
5,824,012 + -1.8
5,824,013 - -0.7
5,824,013 - +0.0
5,824,013 - +0.6
5,824,042 + +1.3
5,824,042 + +0.6
5,824,043 - +0.0
5,824,088 + +0.1
5,824,088 + -1.2
5,824,089 - +0.8
5,824,089 - +0.6

Or see this region's nucleotide sequence