Strain Fitness in Serratia liquefaciens MT49 around IAI46_23490

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23475 and IAI46_23480 are separated by 9 nucleotidesIAI46_23480 and IAI46_23485 are separated by 8 nucleotidesIAI46_23485 and IAI46_23490 overlap by 4 nucleotidesIAI46_23490 and IAI46_23495 are separated by 401 nucleotides IAI46_23475: IAI46_23475 - sulfurtransferase complex subunit TusB, at 4,997,170 to 4,997,457 _23475 IAI46_23480: IAI46_23480 - sulfurtransferase complex subunit TusC, at 4,997,467 to 4,997,826 _23480 IAI46_23485: IAI46_23485 - sulfurtransferase complex subunit TusD, at 4,997,835 to 4,998,221 _23485 IAI46_23490: IAI46_23490 - transcriptional regulator, at 4,998,218 to 4,998,946 _23490 IAI46_23495: IAI46_23495 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 4,999,348 to 5,000,181 _23495 Position (kb) 4998 4999Strain fitness (log2 ratio) -2 -1 0 1at 4997.469 kb on - strandat 4998.271 kb on - strandat 4998.271 kb on - strandat 4998.277 kb on - strandat 4998.277 kb on - strandat 4998.277 kb on - strandat 4998.277 kb on - strandat 4998.296 kb on - strand, within IAI46_23490at 4998.369 kb on - strand, within IAI46_23490at 4998.401 kb on - strand, within IAI46_23490at 4998.413 kb on - strand, within IAI46_23490at 4998.560 kb on - strand, within IAI46_23490at 4998.560 kb on - strand, within IAI46_23490at 4998.649 kb on - strand, within IAI46_23490at 4998.695 kb on - strand, within IAI46_23490at 4998.695 kb on - strand, within IAI46_23490at 4998.695 kb on - strand, within IAI46_23490at 4998.853 kb on - strand, within IAI46_23490at 4998.930 kb on - strandat 4998.941 kb on - strandat 4998.941 kb on - strandat 4998.954 kb on - strandat 4999.040 kb on + strandat 4999.041 kb on - strandat 4999.061 kb on + strandat 4999.062 kb on - strandat 4999.062 kb on - strandat 4999.119 kb on - strandat 4999.123 kb on - strandat 4999.123 kb on - strandat 4999.153 kb on + strandat 4999.485 kb on + strand, within IAI46_23495at 4999.610 kb on + strand, within IAI46_23495at 4999.610 kb on + strand, within IAI46_23495at 4999.617 kb on + strand, within IAI46_23495at 4999.617 kb on + strand, within IAI46_23495at 4999.658 kb on - strand, within IAI46_23495at 4999.660 kb on + strand, within IAI46_23495at 4999.660 kb on + strand, within IAI46_23495at 4999.661 kb on - strand, within IAI46_23495at 4999.661 kb on - strand, within IAI46_23495at 4999.709 kb on - strand, within IAI46_23495at 4999.715 kb on + strand, within IAI46_23495at 4999.715 kb on + strand, within IAI46_23495at 4999.716 kb on - strand, within IAI46_23495at 4999.795 kb on - strand, within IAI46_23495

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,997,469 - +0.5
4,998,271 - -0.3
4,998,271 - +0.1
4,998,277 - -1.1
4,998,277 - +1.1
4,998,277 - -0.0
4,998,277 - -0.1
4,998,296 - IAI46_23490 0.11 +0.4
4,998,369 - IAI46_23490 0.21 -0.9
4,998,401 - IAI46_23490 0.25 -2.3
4,998,413 - IAI46_23490 0.27 +0.1
4,998,560 - IAI46_23490 0.47 +0.3
4,998,560 - IAI46_23490 0.47 -0.3
4,998,649 - IAI46_23490 0.59 +0.1
4,998,695 - IAI46_23490 0.65 +0.2
4,998,695 - IAI46_23490 0.65 -0.1
4,998,695 - IAI46_23490 0.65 -1.3
4,998,853 - IAI46_23490 0.87 -0.5
4,998,930 - -0.9
4,998,941 - +1.6
4,998,941 - -1.0
4,998,954 - +0.2
4,999,040 + -1.1
4,999,041 - +0.2
4,999,061 + -0.4
4,999,062 - +0.0
4,999,062 - +0.4
4,999,119 - -1.1
4,999,123 - +0.5
4,999,123 - +0.4
4,999,153 + -0.4
4,999,485 + IAI46_23495 0.16 -0.7
4,999,610 + IAI46_23495 0.31 +0.9
4,999,610 + IAI46_23495 0.31 -0.4
4,999,617 + IAI46_23495 0.32 +0.2
4,999,617 + IAI46_23495 0.32 +1.1
4,999,658 - IAI46_23495 0.37 -0.2
4,999,660 + IAI46_23495 0.37 -0.5
4,999,660 + IAI46_23495 0.37 +0.5
4,999,661 - IAI46_23495 0.38 +0.0
4,999,661 - IAI46_23495 0.38 +0.1
4,999,709 - IAI46_23495 0.43 -0.0
4,999,715 + IAI46_23495 0.44 +0.8
4,999,715 + IAI46_23495 0.44 +1.4
4,999,716 - IAI46_23495 0.44 +0.6
4,999,795 - IAI46_23495 0.54 +0.2

Or see this region's nucleotide sequence