Strain Fitness in Serratia liquefaciens MT49 around IAI46_22420

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22410 and IAI46_22415 overlap by 1 nucleotidesIAI46_22415 and IAI46_22420 are separated by 14 nucleotidesIAI46_22420 and IAI46_22425 are separated by 4 nucleotidesIAI46_22425 and IAI46_22430 are separated by 4 nucleotides IAI46_22410: IAI46_22410 - lipid asymmetry maintenance protein MlaB, at 4,775,517 to 4,775,819 _22410 IAI46_22415: IAI46_22415 - phospholipid-binding protein MlaC, at 4,775,819 to 4,776,448 _22415 IAI46_22420: IAI46_22420 - outer membrane lipid asymmetry maintenance protein MlaD, at 4,776,463 to 4,777,014 _22420 IAI46_22425: IAI46_22425 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 4,777,019 to 4,777,801 _22425 IAI46_22430: IAI46_22430 - phospholipid ABC transporter ATP-binding protein MlaF, at 4,777,806 to 4,778,621 _22430 Position (kb) 4776 4777 4778Strain fitness (log2 ratio) -2 -1 0 1 2at 4775.465 kb on + strandat 4775.466 kb on - strandat 4775.541 kb on + strandat 4775.541 kb on + strandat 4775.542 kb on - strandat 4775.542 kb on - strandat 4775.542 kb on - strandat 4775.542 kb on - strandat 4775.557 kb on + strand, within IAI46_22410at 4775.557 kb on + strand, within IAI46_22410at 4775.706 kb on - strand, within IAI46_22410at 4775.839 kb on + strandat 4775.896 kb on + strand, within IAI46_22415at 4775.897 kb on - strand, within IAI46_22415at 4775.897 kb on - strand, within IAI46_22415at 4775.897 kb on - strand, within IAI46_22415at 4775.900 kb on + strand, within IAI46_22415at 4775.900 kb on + strand, within IAI46_22415at 4775.901 kb on - strand, within IAI46_22415at 4775.901 kb on - strand, within IAI46_22415at 4775.905 kb on + strand, within IAI46_22415at 4775.905 kb on + strand, within IAI46_22415at 4775.905 kb on + strand, within IAI46_22415at 4775.905 kb on + strand, within IAI46_22415at 4775.964 kb on + strand, within IAI46_22415at 4775.964 kb on + strand, within IAI46_22415at 4775.965 kb on - strand, within IAI46_22415at 4776.105 kb on + strand, within IAI46_22415at 4776.105 kb on + strand, within IAI46_22415at 4776.106 kb on - strand, within IAI46_22415at 4776.106 kb on - strand, within IAI46_22415at 4776.106 kb on - strand, within IAI46_22415at 4776.120 kb on + strand, within IAI46_22415at 4776.120 kb on + strand, within IAI46_22415at 4776.120 kb on + strand, within IAI46_22415at 4776.120 kb on + strand, within IAI46_22415at 4776.120 kb on + strand, within IAI46_22415at 4776.120 kb on + strand, within IAI46_22415at 4776.121 kb on - strand, within IAI46_22415at 4776.121 kb on - strand, within IAI46_22415at 4776.142 kb on - strand, within IAI46_22415at 4776.142 kb on - strand, within IAI46_22415at 4776.156 kb on + strand, within IAI46_22415at 4776.156 kb on + strand, within IAI46_22415at 4776.177 kb on + strand, within IAI46_22415at 4776.178 kb on - strand, within IAI46_22415at 4776.178 kb on - strand, within IAI46_22415at 4776.178 kb on - strand, within IAI46_22415at 4776.178 kb on - strand, within IAI46_22415at 4776.295 kb on + strand, within IAI46_22415at 4776.295 kb on + strand, within IAI46_22415at 4776.295 kb on + strand, within IAI46_22415at 4776.295 kb on + strand, within IAI46_22415at 4776.296 kb on - strand, within IAI46_22415at 4776.296 kb on - strand, within IAI46_22415at 4776.296 kb on - strand, within IAI46_22415at 4776.296 kb on - strand, within IAI46_22415at 4776.296 kb on - strand, within IAI46_22415at 4776.373 kb on - strand, within IAI46_22415at 4776.373 kb on - strand, within IAI46_22415at 4776.431 kb on - strandat 4776.431 kb on - strandat 4776.431 kb on - strandat 4776.442 kb on + strandat 4776.443 kb on - strandat 4776.443 kb on - strandat 4776.443 kb on - strandat 4776.443 kb on - strandat 4776.443 kb on - strandat 4776.464 kb on + strandat 4776.464 kb on + strandat 4776.464 kb on + strandat 4776.471 kb on + strandat 4776.558 kb on + strand, within IAI46_22420at 4776.559 kb on - strand, within IAI46_22420at 4776.559 kb on - strand, within IAI46_22420at 4776.560 kb on + strand, within IAI46_22420at 4776.561 kb on - strand, within IAI46_22420at 4776.561 kb on - strand, within IAI46_22420at 4776.683 kb on + strand, within IAI46_22420at 4776.684 kb on - strand, within IAI46_22420at 4776.684 kb on - strand, within IAI46_22420at 4776.684 kb on - strand, within IAI46_22420at 4776.684 kb on - strand, within IAI46_22420at 4776.747 kb on - strand, within IAI46_22420at 4776.747 kb on - strand, within IAI46_22420at 4776.750 kb on + strand, within IAI46_22420at 4776.751 kb on - strand, within IAI46_22420at 4776.782 kb on + strand, within IAI46_22420at 4776.782 kb on + strand, within IAI46_22420at 4776.783 kb on - strand, within IAI46_22420at 4776.783 kb on - strand, within IAI46_22420at 4776.789 kb on + strand, within IAI46_22420at 4776.801 kb on + strand, within IAI46_22420at 4776.802 kb on - strand, within IAI46_22420at 4776.805 kb on - strand, within IAI46_22420at 4776.896 kb on + strand, within IAI46_22420at 4776.921 kb on + strand, within IAI46_22420at 4776.921 kb on + strand, within IAI46_22420at 4776.922 kb on - strand, within IAI46_22420at 4776.922 kb on - strand, within IAI46_22420at 4776.922 kb on - strand, within IAI46_22420at 4776.975 kb on + strandat 4776.975 kb on + strandat 4776.975 kb on + strandat 4776.976 kb on - strandat 4776.976 kb on - strandat 4776.976 kb on - strandat 4776.976 kb on - strandat 4777.110 kb on - strand, within IAI46_22425at 4777.110 kb on - strand, within IAI46_22425at 4777.138 kb on - strand, within IAI46_22425at 4777.178 kb on + strand, within IAI46_22425at 4777.178 kb on + strand, within IAI46_22425at 4777.178 kb on + strand, within IAI46_22425at 4777.179 kb on - strand, within IAI46_22425at 4777.179 kb on - strand, within IAI46_22425at 4777.375 kb on + strand, within IAI46_22425at 4777.376 kb on - strand, within IAI46_22425at 4777.376 kb on - strand, within IAI46_22425at 4777.561 kb on - strand, within IAI46_22425at 4777.571 kb on + strand, within IAI46_22425at 4777.571 kb on + strand, within IAI46_22425at 4777.578 kb on + strand, within IAI46_22425at 4777.797 kb on - strandat 4777.808 kb on - strandat 4777.808 kb on - strandat 4777.808 kb on - strandat 4777.808 kb on - strandat 4777.825 kb on - strandat 4777.825 kb on - strandat 4777.840 kb on + strandat 4777.840 kb on + strandat 4777.841 kb on - strandat 4777.926 kb on + strand, within IAI46_22430at 4777.926 kb on + strand, within IAI46_22430at 4777.926 kb on + strand, within IAI46_22430at 4777.927 kb on - strand, within IAI46_22430at 4777.950 kb on + strand, within IAI46_22430at 4777.975 kb on + strand, within IAI46_22430at 4777.975 kb on + strand, within IAI46_22430at 4777.975 kb on + strand, within IAI46_22430at 4777.975 kb on + strand, within IAI46_22430at 4777.975 kb on + strand, within IAI46_22430at 4777.976 kb on - strand, within IAI46_22430at 4777.976 kb on - strand, within IAI46_22430at 4777.981 kb on + strand, within IAI46_22430at 4777.981 kb on + strand, within IAI46_22430

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,775,465 + +0.3
4,775,466 - +0.6
4,775,541 + -1.6
4,775,541 + +1.8
4,775,542 - -0.0
4,775,542 - +0.2
4,775,542 - +0.5
4,775,542 - +0.0
4,775,557 + IAI46_22410 0.13 -0.1
4,775,557 + IAI46_22410 0.13 -0.7
4,775,706 - IAI46_22410 0.62 +0.6
4,775,839 + +1.9
4,775,896 + IAI46_22415 0.12 +0.2
4,775,897 - IAI46_22415 0.12 +1.6
4,775,897 - IAI46_22415 0.12 -0.4
4,775,897 - IAI46_22415 0.12 -0.2
4,775,900 + IAI46_22415 0.13 +0.5
4,775,900 + IAI46_22415 0.13 +0.8
4,775,901 - IAI46_22415 0.13 -1.0
4,775,901 - IAI46_22415 0.13 -1.3
4,775,905 + IAI46_22415 0.14 +0.8
4,775,905 + IAI46_22415 0.14 +0.9
4,775,905 + IAI46_22415 0.14 +0.1
4,775,905 + IAI46_22415 0.14 -0.0
4,775,964 + IAI46_22415 0.23 +1.9
4,775,964 + IAI46_22415 0.23 +0.3
4,775,965 - IAI46_22415 0.23 -0.1
4,776,105 + IAI46_22415 0.45 +0.8
4,776,105 + IAI46_22415 0.45 +0.3
4,776,106 - IAI46_22415 0.46 +0.8
4,776,106 - IAI46_22415 0.46 +0.7
4,776,106 - IAI46_22415 0.46 +0.7
4,776,120 + IAI46_22415 0.48 +0.7
4,776,120 + IAI46_22415 0.48 -0.3
4,776,120 + IAI46_22415 0.48 -0.6
4,776,120 + IAI46_22415 0.48 -0.8
4,776,120 + IAI46_22415 0.48 -1.1
4,776,120 + IAI46_22415 0.48 +0.5
4,776,121 - IAI46_22415 0.48 +0.0
4,776,121 - IAI46_22415 0.48 -0.4
4,776,142 - IAI46_22415 0.51 +0.0
4,776,142 - IAI46_22415 0.51 +0.8
4,776,156 + IAI46_22415 0.53 +1.1
4,776,156 + IAI46_22415 0.53 -0.0
4,776,177 + IAI46_22415 0.57 -0.2
4,776,178 - IAI46_22415 0.57 -0.3
4,776,178 - IAI46_22415 0.57 +0.3
4,776,178 - IAI46_22415 0.57 +0.1
4,776,178 - IAI46_22415 0.57 +0.5
4,776,295 + IAI46_22415 0.76 -0.5
4,776,295 + IAI46_22415 0.76 -0.2
4,776,295 + IAI46_22415 0.76 +0.4
4,776,295 + IAI46_22415 0.76 +0.2
4,776,296 - IAI46_22415 0.76 +0.5
4,776,296 - IAI46_22415 0.76 +0.4
4,776,296 - IAI46_22415 0.76 +0.9
4,776,296 - IAI46_22415 0.76 +0.2
4,776,296 - IAI46_22415 0.76 -1.2
4,776,373 - IAI46_22415 0.88 -0.3
4,776,373 - IAI46_22415 0.88 +1.5
4,776,431 - -1.3
4,776,431 - -0.9
4,776,431 - -0.6
4,776,442 + +0.3
4,776,443 - -1.2
4,776,443 - +0.3
4,776,443 - +0.5
4,776,443 - +0.4
4,776,443 - +2.0
4,776,464 + +0.7
4,776,464 + +0.7
4,776,464 + +0.5
4,776,471 + +1.4
4,776,558 + IAI46_22420 0.17 +0.7
4,776,559 - IAI46_22420 0.17 +0.9
4,776,559 - IAI46_22420 0.17 +0.4
4,776,560 + IAI46_22420 0.18 -0.8
4,776,561 - IAI46_22420 0.18 -0.1
4,776,561 - IAI46_22420 0.18 -0.7
4,776,683 + IAI46_22420 0.40 +0.6
4,776,684 - IAI46_22420 0.40 -0.2
4,776,684 - IAI46_22420 0.40 -1.4
4,776,684 - IAI46_22420 0.40 +0.0
4,776,684 - IAI46_22420 0.40 +0.4
4,776,747 - IAI46_22420 0.51 +0.3
4,776,747 - IAI46_22420 0.51 -0.4
4,776,750 + IAI46_22420 0.52 +0.5
4,776,751 - IAI46_22420 0.52 +0.3
4,776,782 + IAI46_22420 0.58 +0.7
4,776,782 + IAI46_22420 0.58 -0.8
4,776,783 - IAI46_22420 0.58 -0.2
4,776,783 - IAI46_22420 0.58 +0.1
4,776,789 + IAI46_22420 0.59 +0.1
4,776,801 + IAI46_22420 0.61 +0.3
4,776,802 - IAI46_22420 0.61 +0.4
4,776,805 - IAI46_22420 0.62 +1.4
4,776,896 + IAI46_22420 0.78 +1.4
4,776,921 + IAI46_22420 0.83 +0.3
4,776,921 + IAI46_22420 0.83 -0.2
4,776,922 - IAI46_22420 0.83 -0.3
4,776,922 - IAI46_22420 0.83 +1.9
4,776,922 - IAI46_22420 0.83 +1.0
4,776,975 + -0.4
4,776,975 + +0.2
4,776,975 + -0.3
4,776,976 - +0.7
4,776,976 - +0.8
4,776,976 - +1.2
4,776,976 - +0.2
4,777,110 - IAI46_22425 0.12 +0.8
4,777,110 - IAI46_22425 0.12 -0.3
4,777,138 - IAI46_22425 0.15 -0.5
4,777,178 + IAI46_22425 0.20 -0.6
4,777,178 + IAI46_22425 0.20 -0.4
4,777,178 + IAI46_22425 0.20 +0.6
4,777,179 - IAI46_22425 0.20 -0.3
4,777,179 - IAI46_22425 0.20 +1.1
4,777,375 + IAI46_22425 0.45 -0.4
4,777,376 - IAI46_22425 0.46 -0.5
4,777,376 - IAI46_22425 0.46 +0.1
4,777,561 - IAI46_22425 0.69 +0.5
4,777,571 + IAI46_22425 0.70 +0.0
4,777,571 + IAI46_22425 0.70 -0.1
4,777,578 + IAI46_22425 0.71 +0.3
4,777,797 - -0.9
4,777,808 - +1.7
4,777,808 - -1.3
4,777,808 - +0.3
4,777,808 - +0.9
4,777,825 - +0.7
4,777,825 - +0.6
4,777,840 + -0.3
4,777,840 + -0.9
4,777,841 - -2.0
4,777,926 + IAI46_22430 0.15 +1.1
4,777,926 + IAI46_22430 0.15 +0.3
4,777,926 + IAI46_22430 0.15 +0.8
4,777,927 - IAI46_22430 0.15 -0.7
4,777,950 + IAI46_22430 0.18 -0.1
4,777,975 + IAI46_22430 0.21 +0.6
4,777,975 + IAI46_22430 0.21 -0.6
4,777,975 + IAI46_22430 0.21 +0.1
4,777,975 + IAI46_22430 0.21 +0.5
4,777,975 + IAI46_22430 0.21 -0.3
4,777,976 - IAI46_22430 0.21 +0.1
4,777,976 - IAI46_22430 0.21 +1.1
4,777,981 + IAI46_22430 0.21 -1.4
4,777,981 + IAI46_22430 0.21 +0.3

Or see this region's nucleotide sequence