Strain Fitness in Serratia liquefaciens MT49 around IAI46_21670

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21660 and IAI46_21665 are separated by 10 nucleotidesIAI46_21665 and IAI46_21670 are separated by 10 nucleotidesIAI46_21670 and IAI46_21675 are separated by 580 nucleotides IAI46_21660: IAI46_21660 - hemagglutinin repeat-containing protein, at 4,596,436 to 4,605,939 _21660 IAI46_21665: IAI46_21665 - toxin-activating lysine-acyltransferase, at 4,605,950 to 4,606,480 _21665 IAI46_21670: IAI46_21670 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 4,606,491 to 4,608,206 _21670 IAI46_21675: IAI46_21675 - aminoimidazole riboside kinase, at 4,608,787 to 4,609,716 _21675 Position (kb) 4606 4607 4608 4609Strain fitness (log2 ratio) -2 -1 0 1 2at 4605.617 kb on + strandat 4605.617 kb on + strandat 4605.618 kb on - strandat 4605.618 kb on - strandat 4605.621 kb on + strandat 4605.806 kb on - strandat 4605.806 kb on - strandat 4605.822 kb on + strandat 4605.823 kb on - strandat 4605.918 kb on + strandat 4606.207 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.308 kb on + strand, within IAI46_21665at 4606.309 kb on - strand, within IAI46_21665at 4606.309 kb on - strand, within IAI46_21665at 4606.309 kb on - strand, within IAI46_21665at 4606.309 kb on - strand, within IAI46_21665at 4606.309 kb on - strand, within IAI46_21665at 4606.472 kb on + strandat 4606.496 kb on - strandat 4606.512 kb on - strandat 4606.582 kb on + strandat 4606.660 kb on + strandat 4606.678 kb on + strand, within IAI46_21670at 4606.693 kb on + strand, within IAI46_21670at 4606.923 kb on - strand, within IAI46_21670at 4606.923 kb on - strand, within IAI46_21670at 4607.011 kb on + strand, within IAI46_21670at 4607.033 kb on + strand, within IAI46_21670at 4607.034 kb on - strand, within IAI46_21670at 4607.034 kb on - strand, within IAI46_21670at 4607.034 kb on - strand, within IAI46_21670at 4607.047 kb on + strand, within IAI46_21670at 4607.048 kb on - strand, within IAI46_21670at 4607.112 kb on - strand, within IAI46_21670at 4607.122 kb on + strand, within IAI46_21670at 4607.122 kb on + strand, within IAI46_21670at 4607.122 kb on + strand, within IAI46_21670at 4607.122 kb on + strand, within IAI46_21670at 4607.123 kb on - strand, within IAI46_21670at 4607.126 kb on + strand, within IAI46_21670at 4607.152 kb on + strand, within IAI46_21670at 4607.153 kb on - strand, within IAI46_21670at 4607.153 kb on - strand, within IAI46_21670at 4607.153 kb on - strand, within IAI46_21670at 4607.162 kb on + strand, within IAI46_21670at 4607.234 kb on - strand, within IAI46_21670at 4607.272 kb on + strand, within IAI46_21670at 4607.272 kb on + strand, within IAI46_21670at 4607.273 kb on - strand, within IAI46_21670at 4607.273 kb on - strand, within IAI46_21670at 4607.273 kb on - strand, within IAI46_21670at 4607.273 kb on - strand, within IAI46_21670at 4607.278 kb on + strand, within IAI46_21670at 4607.278 kb on + strand, within IAI46_21670at 4607.278 kb on + strand, within IAI46_21670at 4607.278 kb on + strand, within IAI46_21670at 4607.278 kb on + strand, within IAI46_21670at 4607.279 kb on - strand, within IAI46_21670at 4607.279 kb on - strand, within IAI46_21670at 4607.279 kb on - strand, within IAI46_21670at 4607.279 kb on - strand, within IAI46_21670at 4607.379 kb on - strand, within IAI46_21670at 4607.390 kb on + strand, within IAI46_21670at 4607.391 kb on - strand, within IAI46_21670at 4607.392 kb on + strand, within IAI46_21670at 4607.392 kb on + strand, within IAI46_21670at 4607.392 kb on + strand, within IAI46_21670at 4607.393 kb on - strand, within IAI46_21670at 4607.393 kb on - strand, within IAI46_21670at 4607.393 kb on - strand, within IAI46_21670at 4607.437 kb on - strand, within IAI46_21670at 4607.449 kb on + strand, within IAI46_21670at 4607.496 kb on - strand, within IAI46_21670at 4607.669 kb on - strand, within IAI46_21670at 4607.669 kb on - strand, within IAI46_21670at 4607.680 kb on + strand, within IAI46_21670at 4607.680 kb on + strand, within IAI46_21670at 4607.719 kb on + strand, within IAI46_21670at 4607.719 kb on + strand, within IAI46_21670at 4607.787 kb on - strand, within IAI46_21670at 4607.787 kb on - strand, within IAI46_21670at 4607.794 kb on + strand, within IAI46_21670at 4607.825 kb on + strand, within IAI46_21670at 4607.826 kb on - strand, within IAI46_21670at 4607.978 kb on + strand, within IAI46_21670at 4607.978 kb on + strand, within IAI46_21670at 4607.979 kb on - strand, within IAI46_21670at 4608.070 kb on - strandat 4608.070 kb on - strandat 4608.070 kb on - strandat 4608.070 kb on - strandat 4608.122 kb on + strandat 4608.126 kb on + strandat 4608.127 kb on - strandat 4608.156 kb on - strandat 4608.191 kb on - strandat 4608.191 kb on - strandat 4608.208 kb on - strandat 4608.233 kb on - strandat 4608.233 kb on - strandat 4608.265 kb on + strandat 4608.265 kb on + strandat 4608.266 kb on - strandat 4608.277 kb on + strandat 4608.278 kb on - strandat 4608.278 kb on - strandat 4608.321 kb on - strandat 4608.336 kb on - strandat 4608.416 kb on - strandat 4608.419 kb on + strandat 4608.548 kb on - strandat 4608.559 kb on + strandat 4608.559 kb on + strandat 4608.632 kb on + strandat 4608.633 kb on - strandat 4608.647 kb on + strandat 4608.647 kb on + strandat 4608.647 kb on + strandat 4608.670 kb on + strandat 4608.671 kb on - strandat 4608.671 kb on - strandat 4608.800 kb on + strandat 4608.857 kb on + strandat 4608.858 kb on + strandat 4608.858 kb on + strandat 4608.858 kb on + strandat 4608.858 kb on + strandat 4608.859 kb on - strandat 4609.005 kb on + strand, within IAI46_21675at 4609.005 kb on + strand, within IAI46_21675at 4609.006 kb on - strand, within IAI46_21675at 4609.168 kb on - strand, within IAI46_21675

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,605,617 + -0.1
4,605,617 + -0.3
4,605,618 - +0.5
4,605,618 - +1.5
4,605,621 + +1.8
4,605,806 - +0.8
4,605,806 - +0.1
4,605,822 + -0.4
4,605,823 - -0.7
4,605,918 + +0.7
4,606,207 + IAI46_21665 0.48 +0.5
4,606,308 + IAI46_21665 0.67 +0.3
4,606,308 + IAI46_21665 0.67 -0.6
4,606,308 + IAI46_21665 0.67 -0.2
4,606,308 + IAI46_21665 0.67 -0.2
4,606,308 + IAI46_21665 0.67 +0.5
4,606,308 + IAI46_21665 0.67 +0.7
4,606,309 - IAI46_21665 0.68 +0.3
4,606,309 - IAI46_21665 0.68 -0.3
4,606,309 - IAI46_21665 0.68 +0.0
4,606,309 - IAI46_21665 0.68 +0.4
4,606,309 - IAI46_21665 0.68 -0.6
4,606,472 + +0.2
4,606,496 - -0.1
4,606,512 - +0.4
4,606,582 + +0.9
4,606,660 + -2.3
4,606,678 + IAI46_21670 0.11 +0.3
4,606,693 + IAI46_21670 0.12 +0.1
4,606,923 - IAI46_21670 0.25 +0.2
4,606,923 - IAI46_21670 0.25 -0.0
4,607,011 + IAI46_21670 0.30 +0.2
4,607,033 + IAI46_21670 0.32 +0.6
4,607,034 - IAI46_21670 0.32 -0.6
4,607,034 - IAI46_21670 0.32 -0.1
4,607,034 - IAI46_21670 0.32 -0.9
4,607,047 + IAI46_21670 0.32 -1.2
4,607,048 - IAI46_21670 0.32 -0.5
4,607,112 - IAI46_21670 0.36 +0.0
4,607,122 + IAI46_21670 0.37 -0.2
4,607,122 + IAI46_21670 0.37 -0.7
4,607,122 + IAI46_21670 0.37 -1.7
4,607,122 + IAI46_21670 0.37 +0.7
4,607,123 - IAI46_21670 0.37 -0.0
4,607,126 + IAI46_21670 0.37 -0.2
4,607,152 + IAI46_21670 0.39 -0.8
4,607,153 - IAI46_21670 0.39 +0.2
4,607,153 - IAI46_21670 0.39 +0.6
4,607,153 - IAI46_21670 0.39 +0.9
4,607,162 + IAI46_21670 0.39 +0.6
4,607,234 - IAI46_21670 0.43 +0.3
4,607,272 + IAI46_21670 0.46 +0.4
4,607,272 + IAI46_21670 0.46 +0.5
4,607,273 - IAI46_21670 0.46 +0.1
4,607,273 - IAI46_21670 0.46 -0.4
4,607,273 - IAI46_21670 0.46 +0.2
4,607,273 - IAI46_21670 0.46 +0.8
4,607,278 + IAI46_21670 0.46 -0.3
4,607,278 + IAI46_21670 0.46 +0.3
4,607,278 + IAI46_21670 0.46 -0.0
4,607,278 + IAI46_21670 0.46 +0.0
4,607,278 + IAI46_21670 0.46 +0.2
4,607,279 - IAI46_21670 0.46 +1.2
4,607,279 - IAI46_21670 0.46 +0.0
4,607,279 - IAI46_21670 0.46 +0.3
4,607,279 - IAI46_21670 0.46 +0.3
4,607,379 - IAI46_21670 0.52 -0.7
4,607,390 + IAI46_21670 0.52 -0.5
4,607,391 - IAI46_21670 0.52 +0.1
4,607,392 + IAI46_21670 0.53 +1.0
4,607,392 + IAI46_21670 0.53 +0.7
4,607,392 + IAI46_21670 0.53 -0.4
4,607,393 - IAI46_21670 0.53 -0.4
4,607,393 - IAI46_21670 0.53 +0.1
4,607,393 - IAI46_21670 0.53 +0.5
4,607,437 - IAI46_21670 0.55 -0.6
4,607,449 + IAI46_21670 0.56 +0.1
4,607,496 - IAI46_21670 0.59 +0.2
4,607,669 - IAI46_21670 0.69 +0.4
4,607,669 - IAI46_21670 0.69 +0.9
4,607,680 + IAI46_21670 0.69 +0.3
4,607,680 + IAI46_21670 0.69 -0.2
4,607,719 + IAI46_21670 0.72 +0.3
4,607,719 + IAI46_21670 0.72 +0.1
4,607,787 - IAI46_21670 0.76 -0.1
4,607,787 - IAI46_21670 0.76 -1.1
4,607,794 + IAI46_21670 0.76 -1.0
4,607,825 + IAI46_21670 0.78 -0.3
4,607,826 - IAI46_21670 0.78 -0.1
4,607,978 + IAI46_21670 0.87 +0.5
4,607,978 + IAI46_21670 0.87 +0.8
4,607,979 - IAI46_21670 0.87 -0.5
4,608,070 - +1.9
4,608,070 - +0.6
4,608,070 - +0.4
4,608,070 - -0.2
4,608,122 + +0.3
4,608,126 + +0.1
4,608,127 - -0.3
4,608,156 - +0.8
4,608,191 - -0.7
4,608,191 - +0.1
4,608,208 - +1.0
4,608,233 - -0.2
4,608,233 - +0.9
4,608,265 + -0.9
4,608,265 + -0.1
4,608,266 - +0.7
4,608,277 + +0.1
4,608,278 - +0.5
4,608,278 - +0.1
4,608,321 - -1.3
4,608,336 - +0.2
4,608,416 - -0.2
4,608,419 + -1.6
4,608,548 - +0.4
4,608,559 + +0.5
4,608,559 + +0.6
4,608,632 + +0.5
4,608,633 - +0.9
4,608,647 + -1.5
4,608,647 + +0.2
4,608,647 + +0.5
4,608,670 + +0.4
4,608,671 - +0.4
4,608,671 - +1.3
4,608,800 + +0.9
4,608,857 + +0.8
4,608,858 + +0.5
4,608,858 + -0.2
4,608,858 + +1.1
4,608,858 + -1.2
4,608,859 - +0.5
4,609,005 + IAI46_21675 0.23 +0.1
4,609,005 + IAI46_21675 0.23 -0.2
4,609,006 - IAI46_21675 0.24 +0.5
4,609,168 - IAI46_21675 0.41 +0.4

Or see this region's nucleotide sequence