Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_20590 and IAI46_20595 overlap by 11 nucleotides IAI46_20595 and IAI46_20600 are separated by 11 nucleotides IAI46_20600 and IAI46_20605 are separated by 391 nucleotides
IAI46_20590: IAI46_20590 - MFS transporter, at 4,355,533 to 4,356,753
_20590
IAI46_20595: IAI46_20595 - hypothetical protein, at 4,356,743 to 4,356,916
_20595
IAI46_20600: IAI46_20600 - YmiA family putative membrane protein, at 4,356,928 to 4,357,041
_20600
IAI46_20605: IAI46_20605 - multidrug ABC transporter permease/ATP-binding protein, at 4,357,433 to 4,359,085
_20605
Position (kb) 4356
4357
4358 Strain fitness (log2 ratio) -1
0
1
2 at 4356.253 kb on + strand, within IAI46_20590 at 4356.254 kb on - strand, within IAI46_20590 at 4356.262 kb on - strand, within IAI46_20590 at 4356.330 kb on + strand, within IAI46_20590 at 4356.330 kb on + strand, within IAI46_20590 at 4356.330 kb on + strand, within IAI46_20590 at 4356.331 kb on - strand, within IAI46_20590 at 4356.331 kb on - strand, within IAI46_20590 at 4356.334 kb on + strand, within IAI46_20590 at 4356.334 kb on + strand, within IAI46_20590 at 4356.414 kb on - strand, within IAI46_20590 at 4356.604 kb on + strand, within IAI46_20590 at 4356.605 kb on - strand, within IAI46_20590 at 4356.644 kb on + strand at 4356.644 kb on + strand at 4356.644 kb on + strand at 4356.818 kb on - strand, within IAI46_20595 at 4356.922 kb on + strand at 4356.922 kb on + strand at 4356.922 kb on + strand at 4356.923 kb on - strand at 4356.933 kb on + strand at 4356.933 kb on + strand at 4356.944 kb on + strand, within IAI46_20600 at 4356.988 kb on - strand, within IAI46_20600 at 4356.991 kb on + strand, within IAI46_20600 at 4356.991 kb on + strand, within IAI46_20600 at 4356.991 kb on + strand, within IAI46_20600 at 4357.008 kb on + strand, within IAI46_20600 at 4357.014 kb on + strand, within IAI46_20600 at 4357.091 kb on - strand at 4357.110 kb on + strand at 4357.127 kb on - strand at 4357.127 kb on - strand at 4357.127 kb on - strand at 4357.167 kb on + strand at 4357.167 kb on + strand at 4357.247 kb on - strand at 4357.251 kb on + strand at 4357.279 kb on - strand at 4357.290 kb on + strand at 4357.291 kb on - strand at 4357.299 kb on - strand at 4357.350 kb on + strand at 4357.361 kb on + strand at 4357.362 kb on - strand at 4357.428 kb on - strand at 4357.727 kb on + strand, within IAI46_20605 at 4357.937 kb on + strand, within IAI46_20605 at 4357.938 kb on - strand, within IAI46_20605 at 4357.960 kb on - strand, within IAI46_20605 at 4357.960 kb on - strand, within IAI46_20605
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 4,356,253 + IAI46_20590 0.59 +0.3 4,356,254 - IAI46_20590 0.59 -1.0 4,356,262 - IAI46_20590 0.60 -0.3 4,356,330 + IAI46_20590 0.65 +0.3 4,356,330 + IAI46_20590 0.65 +0.1 4,356,330 + IAI46_20590 0.65 -1.1 4,356,331 - IAI46_20590 0.65 -0.9 4,356,331 - IAI46_20590 0.65 -0.8 4,356,334 + IAI46_20590 0.66 -0.3 4,356,334 + IAI46_20590 0.66 -0.1 4,356,414 - IAI46_20590 0.72 -0.5 4,356,604 + IAI46_20590 0.88 +0.6 4,356,605 - IAI46_20590 0.88 +0.4 4,356,644 + +1.1 4,356,644 + +0.2 4,356,644 + +0.4 4,356,818 - IAI46_20595 0.43 -0.2 4,356,922 + -0.2 4,356,922 + -0.3 4,356,922 + -0.7 4,356,923 - -0.2 4,356,933 + -0.8 4,356,933 + +0.5 4,356,944 + IAI46_20600 0.14 +0.2 4,356,988 - IAI46_20600 0.53 +0.3 4,356,991 + IAI46_20600 0.55 +1.0 4,356,991 + IAI46_20600 0.55 -0.8 4,356,991 + IAI46_20600 0.55 +0.7 4,357,008 + IAI46_20600 0.70 -0.9 4,357,014 + IAI46_20600 0.75 +0.8 4,357,091 - +0.3 4,357,110 + -0.4 4,357,127 - -0.1 4,357,127 - +0.3 4,357,127 - +0.4 4,357,167 + -0.0 4,357,167 + -0.2 4,357,247 - +0.5 4,357,251 + +2.2 4,357,279 - -0.1 4,357,290 + -0.2 4,357,291 - +0.2 4,357,299 - +0.1 4,357,350 + +1.1 4,357,361 + -0.3 4,357,362 - +0.4 4,357,428 - +0.8 4,357,727 + IAI46_20605 0.18 +0.3 4,357,937 + IAI46_20605 0.30 +0.4 4,357,938 - IAI46_20605 0.31 +0.8 4,357,960 - IAI46_20605 0.32 +0.2 4,357,960 - IAI46_20605 0.32 -0.3
Or see this region's nucleotide sequence