Strain Fitness in Serratia liquefaciens MT49 around IAI46_19775

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19770 and IAI46_19775 are separated by 416 nucleotidesIAI46_19775 and IAI46_19780 are separated by 57 nucleotidesIAI46_19780 and IAI46_19785 are separated by 40 nucleotides IAI46_19770: IAI46_19770 - IS3 family transposase, at 4,175,122 to 4,176,242 _19770 IAI46_19775: IAI46_19775 - HlyD family secretion protein, at 4,176,659 to 4,177,795 _19775 IAI46_19780: IAI46_19780 - DUF3302 domain-containing protein, at 4,177,853 to 4,178,152 _19780 IAI46_19785: IAI46_19785 - DUF3313 domain-containing protein, at 4,178,193 to 4,178,846 _19785 Position (kb) 4176 4177 4178Strain fitness (log2 ratio) -1 0 1 2at 4175.834 kb on + strand, within IAI46_19770at 4175.917 kb on + strand, within IAI46_19770at 4175.918 kb on - strand, within IAI46_19770at 4176.030 kb on - strand, within IAI46_19770at 4176.089 kb on + strand, within IAI46_19770at 4176.114 kb on - strand, within IAI46_19770at 4176.116 kb on + strand, within IAI46_19770at 4176.132 kb on + strandat 4176.134 kb on + strandat 4176.236 kb on + strandat 4176.236 kb on + strandat 4176.241 kb on - strandat 4176.241 kb on - strandat 4176.249 kb on + strandat 4176.249 kb on + strandat 4176.249 kb on + strandat 4176.249 kb on + strandat 4176.249 kb on + strandat 4176.249 kb on + strandat 4176.250 kb on - strandat 4176.250 kb on - strandat 4176.250 kb on - strandat 4176.250 kb on - strandat 4176.253 kb on + strandat 4176.253 kb on + strandat 4176.315 kb on + strandat 4176.315 kb on + strandat 4176.316 kb on - strandat 4176.320 kb on + strandat 4176.320 kb on + strandat 4176.320 kb on + strandat 4176.325 kb on - strandat 4176.329 kb on - strandat 4176.333 kb on + strandat 4176.406 kb on - strandat 4176.415 kb on + strandat 4176.434 kb on - strandat 4176.473 kb on + strandat 4176.476 kb on - strandat 4176.476 kb on - strandat 4176.476 kb on - strandat 4176.506 kb on + strandat 4176.527 kb on + strandat 4176.532 kb on - strandat 4176.672 kb on + strandat 4176.673 kb on - strandat 4176.678 kb on + strandat 4176.678 kb on + strandat 4176.678 kb on + strandat 4176.678 kb on + strandat 4176.678 kb on + strandat 4176.679 kb on - strandat 4176.679 kb on - strandat 4176.679 kb on - strandat 4176.679 kb on - strandat 4176.818 kb on + strand, within IAI46_19775at 4176.862 kb on + strand, within IAI46_19775at 4176.863 kb on - strand, within IAI46_19775at 4176.880 kb on - strand, within IAI46_19775at 4176.953 kb on + strand, within IAI46_19775at 4176.954 kb on - strand, within IAI46_19775at 4177.007 kb on + strand, within IAI46_19775at 4177.008 kb on - strand, within IAI46_19775at 4177.110 kb on + strand, within IAI46_19775at 4177.110 kb on + strand, within IAI46_19775at 4177.111 kb on - strand, within IAI46_19775at 4177.111 kb on - strand, within IAI46_19775at 4177.209 kb on + strand, within IAI46_19775at 4177.210 kb on - strand, within IAI46_19775at 4177.425 kb on - strand, within IAI46_19775at 4177.425 kb on - strand, within IAI46_19775at 4177.425 kb on - strand, within IAI46_19775at 4177.425 kb on - strand, within IAI46_19775at 4177.429 kb on + strand, within IAI46_19775at 4177.544 kb on + strand, within IAI46_19775at 4177.544 kb on + strand, within IAI46_19775at 4177.544 kb on + strand, within IAI46_19775at 4177.545 kb on - strand, within IAI46_19775at 4177.559 kb on - strand, within IAI46_19775at 4177.633 kb on - strand, within IAI46_19775at 4177.637 kb on - strand, within IAI46_19775at 4177.637 kb on - strand, within IAI46_19775at 4177.638 kb on + strand, within IAI46_19775at 4177.638 kb on + strand, within IAI46_19775at 4177.639 kb on - strand, within IAI46_19775at 4177.650 kb on + strand, within IAI46_19775at 4177.650 kb on + strand, within IAI46_19775at 4177.677 kb on - strand, within IAI46_19775at 4177.682 kb on - strandat 4177.770 kb on + strandat 4177.781 kb on - strandat 4177.785 kb on - strandat 4177.813 kb on + strandat 4177.859 kb on + strandat 4177.872 kb on - strandat 4177.981 kb on + strand, within IAI46_19780at 4178.064 kb on + strand, within IAI46_19780at 4178.065 kb on - strand, within IAI46_19780at 4178.081 kb on - strand, within IAI46_19780at 4178.081 kb on - strand, within IAI46_19780at 4178.124 kb on - strandat 4178.140 kb on - strandat 4178.155 kb on + strandat 4178.156 kb on - strandat 4178.175 kb on + strandat 4178.179 kb on + strandat 4178.194 kb on + strandat 4178.195 kb on - strandat 4178.195 kb on - strandat 4178.216 kb on + strandat 4178.232 kb on - strandat 4178.257 kb on - strandat 4178.279 kb on + strand, within IAI46_19785at 4178.330 kb on + strand, within IAI46_19785at 4178.360 kb on + strand, within IAI46_19785at 4178.360 kb on + strand, within IAI46_19785at 4178.361 kb on - strand, within IAI46_19785at 4178.362 kb on + strand, within IAI46_19785at 4178.363 kb on - strand, within IAI46_19785at 4178.363 kb on - strand, within IAI46_19785at 4178.433 kb on + strand, within IAI46_19785at 4178.460 kb on - strand, within IAI46_19785at 4178.480 kb on + strand, within IAI46_19785at 4178.481 kb on - strand, within IAI46_19785at 4178.569 kb on + strand, within IAI46_19785at 4178.580 kb on - strand, within IAI46_19785at 4178.601 kb on + strand, within IAI46_19785at 4178.647 kb on + strand, within IAI46_19785at 4178.657 kb on - strand, within IAI46_19785at 4178.681 kb on + strand, within IAI46_19785

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,175,834 + IAI46_19770 0.64 +0.2
4,175,917 + IAI46_19770 0.71 -0.2
4,175,918 - IAI46_19770 0.71 -0.8
4,176,030 - IAI46_19770 0.81 -0.2
4,176,089 + IAI46_19770 0.86 +0.8
4,176,114 - IAI46_19770 0.88 -0.3
4,176,116 + IAI46_19770 0.89 -0.6
4,176,132 + +0.4
4,176,134 + -0.6
4,176,236 + +0.5
4,176,236 + +0.2
4,176,241 - +0.3
4,176,241 - +0.1
4,176,249 + +0.6
4,176,249 + +0.1
4,176,249 + -0.0
4,176,249 + -0.2
4,176,249 + +1.2
4,176,249 + -0.0
4,176,250 - +0.7
4,176,250 - -0.2
4,176,250 - +0.2
4,176,250 - +0.7
4,176,253 + -0.1
4,176,253 + -0.0
4,176,315 + +1.0
4,176,315 + +1.2
4,176,316 - -0.2
4,176,320 + -0.4
4,176,320 + +0.5
4,176,320 + +0.1
4,176,325 - +1.0
4,176,329 - -0.4
4,176,333 + -0.0
4,176,406 - +0.1
4,176,415 + +0.3
4,176,434 - -1.5
4,176,473 + -0.1
4,176,476 - +0.2
4,176,476 - +0.7
4,176,476 - +0.1
4,176,506 + -0.3
4,176,527 + +0.0
4,176,532 - +0.6
4,176,672 + -0.6
4,176,673 - +0.3
4,176,678 + -0.6
4,176,678 + -0.9
4,176,678 + -0.6
4,176,678 + +0.4
4,176,678 + +0.6
4,176,679 - +0.7
4,176,679 - -0.3
4,176,679 - +1.3
4,176,679 - +0.5
4,176,818 + IAI46_19775 0.14 +0.0
4,176,862 + IAI46_19775 0.18 +0.0
4,176,863 - IAI46_19775 0.18 +0.5
4,176,880 - IAI46_19775 0.19 +0.2
4,176,953 + IAI46_19775 0.26 +2.4
4,176,954 - IAI46_19775 0.26 +0.4
4,177,007 + IAI46_19775 0.31 +0.7
4,177,008 - IAI46_19775 0.31 +0.2
4,177,110 + IAI46_19775 0.40 +0.0
4,177,110 + IAI46_19775 0.40 +0.3
4,177,111 - IAI46_19775 0.40 +0.1
4,177,111 - IAI46_19775 0.40 -0.6
4,177,209 + IAI46_19775 0.48 +0.6
4,177,210 - IAI46_19775 0.48 +0.6
4,177,425 - IAI46_19775 0.67 -0.1
4,177,425 - IAI46_19775 0.67 -0.2
4,177,425 - IAI46_19775 0.67 +0.2
4,177,425 - IAI46_19775 0.67 -0.7
4,177,429 + IAI46_19775 0.68 +0.9
4,177,544 + IAI46_19775 0.78 +0.4
4,177,544 + IAI46_19775 0.78 +0.4
4,177,544 + IAI46_19775 0.78 +0.5
4,177,545 - IAI46_19775 0.78 +0.6
4,177,559 - IAI46_19775 0.79 +0.1
4,177,633 - IAI46_19775 0.86 +0.6
4,177,637 - IAI46_19775 0.86 +0.8
4,177,637 - IAI46_19775 0.86 +0.8
4,177,638 + IAI46_19775 0.86 -0.8
4,177,638 + IAI46_19775 0.86 -0.7
4,177,639 - IAI46_19775 0.86 -0.6
4,177,650 + IAI46_19775 0.87 +0.1
4,177,650 + IAI46_19775 0.87 +0.1
4,177,677 - IAI46_19775 0.90 +0.8
4,177,682 - +0.0
4,177,770 + +1.1
4,177,781 - +0.5
4,177,785 - +0.1
4,177,813 + +0.1
4,177,859 + +1.6
4,177,872 - +0.1
4,177,981 + IAI46_19780 0.43 +0.1
4,178,064 + IAI46_19780 0.70 +0.1
4,178,065 - IAI46_19780 0.71 +0.3
4,178,081 - IAI46_19780 0.76 +0.3
4,178,081 - IAI46_19780 0.76 +0.4
4,178,124 - +0.3
4,178,140 - +0.6
4,178,155 + +0.8
4,178,156 - -1.3
4,178,175 + +0.4
4,178,179 + +1.2
4,178,194 + -1.0
4,178,195 - -0.9
4,178,195 - -0.2
4,178,216 + +0.5
4,178,232 - +0.3
4,178,257 - +0.2
4,178,279 + IAI46_19785 0.13 +0.4
4,178,330 + IAI46_19785 0.21 +0.0
4,178,360 + IAI46_19785 0.26 +1.0
4,178,360 + IAI46_19785 0.26 +0.2
4,178,361 - IAI46_19785 0.26 +0.0
4,178,362 + IAI46_19785 0.26 -1.2
4,178,363 - IAI46_19785 0.26 +0.6
4,178,363 - IAI46_19785 0.26 +0.8
4,178,433 + IAI46_19785 0.37 +0.2
4,178,460 - IAI46_19785 0.41 +0.4
4,178,480 + IAI46_19785 0.44 +0.3
4,178,481 - IAI46_19785 0.44 +0.1
4,178,569 + IAI46_19785 0.57 +0.4
4,178,580 - IAI46_19785 0.59 -0.5
4,178,601 + IAI46_19785 0.62 -0.6
4,178,647 + IAI46_19785 0.69 -0.9
4,178,657 - IAI46_19785 0.71 +0.1
4,178,681 + IAI46_19785 0.75 -1.2

Or see this region's nucleotide sequence