Strain Fitness in Serratia liquefaciens MT49 around IAI46_19105

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19095 and IAI46_19100 are separated by 86 nucleotidesIAI46_19100 and IAI46_19105 overlap by 4 nucleotidesIAI46_19105 and IAI46_19110 are separated by 206 nucleotidesIAI46_19110 and IAI46_19115 are separated by 46 nucleotides IAI46_19095: IAI46_19095 - inhibitor of vertebrate lysozyme family protein, at 4,028,172 to 4,028,630 _19095 IAI46_19100: IAI46_19100 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 4,028,717 to 4,029,517 _19100 IAI46_19105: IAI46_19105 - hydroxyethylthiazole kinase, at 4,029,514 to 4,030,308 _19105 IAI46_19110: IAI46_19110 - GNAT family N-acetyltransferase, at 4,030,515 to 4,030,940 _19110 IAI46_19115: IAI46_19115 - MFS transporter, at 4,030,987 to 4,032,252 _19115 Position (kb) 4029 4030 4031Strain fitness (log2 ratio) -2 -1 0 1at 4028.685 kb on + strandat 4028.686 kb on - strandat 4028.718 kb on + strandat 4028.741 kb on + strandat 4028.802 kb on + strand, within IAI46_19100at 4028.802 kb on + strand, within IAI46_19100at 4028.803 kb on - strand, within IAI46_19100at 4028.896 kb on + strand, within IAI46_19100at 4029.229 kb on - strand, within IAI46_19100at 4029.353 kb on + strand, within IAI46_19100at 4029.353 kb on + strand, within IAI46_19100at 4029.353 kb on + strand, within IAI46_19100at 4029.353 kb on + strand, within IAI46_19100at 4029.353 kb on + strand, within IAI46_19100at 4029.353 kb on + strand, within IAI46_19100at 4029.353 kb on + strand, within IAI46_19100at 4029.353 kb on + strand, within IAI46_19100at 4029.354 kb on - strand, within IAI46_19100at 4029.354 kb on - strand, within IAI46_19100at 4029.360 kb on + strand, within IAI46_19100at 4029.360 kb on + strand, within IAI46_19100at 4029.361 kb on - strand, within IAI46_19100at 4029.421 kb on - strand, within IAI46_19100at 4029.542 kb on + strandat 4029.542 kb on + strandat 4029.776 kb on + strand, within IAI46_19105at 4029.776 kb on + strand, within IAI46_19105at 4029.777 kb on - strand, within IAI46_19105at 4029.777 kb on - strand, within IAI46_19105at 4029.777 kb on - strand, within IAI46_19105at 4029.794 kb on - strand, within IAI46_19105at 4029.803 kb on - strand, within IAI46_19105at 4029.872 kb on - strand, within IAI46_19105at 4030.309 kb on - strandat 4030.309 kb on - strandat 4030.390 kb on + strandat 4030.486 kb on - strandat 4030.487 kb on + strandat 4030.488 kb on - strandat 4030.567 kb on - strand, within IAI46_19110at 4030.580 kb on + strand, within IAI46_19110at 4030.656 kb on - strand, within IAI46_19110at 4030.735 kb on - strand, within IAI46_19110at 4030.857 kb on + strand, within IAI46_19110at 4030.858 kb on - strand, within IAI46_19110at 4030.912 kb on - strandat 4030.914 kb on + strandat 4030.914 kb on + strandat 4030.943 kb on + strandat 4030.974 kb on + strandat 4030.975 kb on - strandat 4031.056 kb on + strandat 4031.056 kb on + strandat 4031.057 kb on - strandat 4031.105 kb on + strandat 4031.137 kb on - strand, within IAI46_19115at 4031.175 kb on - strand, within IAI46_19115at 4031.212 kb on - strand, within IAI46_19115at 4031.295 kb on + strand, within IAI46_19115at 4031.296 kb on - strand, within IAI46_19115

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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4,028,685 + +0.0
4,028,686 - +0.0
4,028,718 + -1.3
4,028,741 + -0.9
4,028,802 + IAI46_19100 0.11 -0.4
4,028,802 + IAI46_19100 0.11 +0.1
4,028,803 - IAI46_19100 0.11 +0.3
4,028,896 + IAI46_19100 0.22 -0.2
4,029,229 - IAI46_19100 0.64 -0.1
4,029,353 + IAI46_19100 0.79 +1.2
4,029,353 + IAI46_19100 0.79 +1.3
4,029,353 + IAI46_19100 0.79 -0.3
4,029,353 + IAI46_19100 0.79 -0.5
4,029,353 + IAI46_19100 0.79 +0.3
4,029,353 + IAI46_19100 0.79 +1.6
4,029,353 + IAI46_19100 0.79 -0.9
4,029,353 + IAI46_19100 0.79 -0.6
4,029,354 - IAI46_19100 0.80 +0.3
4,029,354 - IAI46_19100 0.80 -0.5
4,029,360 + IAI46_19100 0.80 +0.1
4,029,360 + IAI46_19100 0.80 -0.3
4,029,361 - IAI46_19100 0.80 +1.2
4,029,421 - IAI46_19100 0.88 +0.3
4,029,542 + -0.5
4,029,542 + +0.1
4,029,776 + IAI46_19105 0.33 -1.2
4,029,776 + IAI46_19105 0.33 -0.1
4,029,777 - IAI46_19105 0.33 +0.1
4,029,777 - IAI46_19105 0.33 +0.2
4,029,777 - IAI46_19105 0.33 +0.0
4,029,794 - IAI46_19105 0.35 +0.4
4,029,803 - IAI46_19105 0.36 -1.0
4,029,872 - IAI46_19105 0.45 +0.7
4,030,309 - -0.4
4,030,309 - +0.9
4,030,390 + -0.0
4,030,486 - -0.7
4,030,487 + +0.2
4,030,488 - +0.5
4,030,567 - IAI46_19110 0.12 -0.7
4,030,580 + IAI46_19110 0.15 -0.1
4,030,656 - IAI46_19110 0.33 -0.7
4,030,735 - IAI46_19110 0.52 +0.7
4,030,857 + IAI46_19110 0.80 +0.3
4,030,858 - IAI46_19110 0.81 +0.7
4,030,912 - -0.5
4,030,914 + -1.1
4,030,914 + +0.4
4,030,943 + +0.2
4,030,974 + +1.0
4,030,975 - -0.4
4,031,056 + -0.8
4,031,056 + +0.3
4,031,057 - -0.5
4,031,105 + +0.2
4,031,137 - IAI46_19115 0.12 +0.1
4,031,175 - IAI46_19115 0.15 -2.2
4,031,212 - IAI46_19115 0.18 +0.6
4,031,295 + IAI46_19115 0.24 +0.7
4,031,296 - IAI46_19115 0.24 +0.8

Or see this region's nucleotide sequence