Strain Fitness in Serratia liquefaciens MT49 around IAI46_17745

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17735 and IAI46_17740 are separated by 16 nucleotidesIAI46_17740 and IAI46_17745 are separated by 146 nucleotidesIAI46_17745 and IAI46_17750 are separated by 354 nucleotides IAI46_17735: IAI46_17735 - sugar phosphatase, at 3,739,728 to 3,740,384 _17735 IAI46_17740: IAI46_17740 - YfbU family protein, at 3,740,401 to 3,740,895 _17740 IAI46_17745: IAI46_17745 - DUF412 domain-containing protein, at 3,741,042 to 3,741,497 _17745 IAI46_17750: IAI46_17750 - acetate kinase, at 3,741,852 to 3,743,054 _17750 Position (kb) 3741 3742Strain fitness (log2 ratio) -1 0 1 2at 3740.049 kb on + strand, within IAI46_17735at 3740.219 kb on + strand, within IAI46_17735at 3740.238 kb on - strand, within IAI46_17735at 3740.258 kb on + strand, within IAI46_17735at 3740.323 kb on - strandat 3740.444 kb on + strandat 3740.470 kb on - strand, within IAI46_17740at 3740.470 kb on - strand, within IAI46_17740at 3740.478 kb on + strand, within IAI46_17740at 3740.478 kb on + strand, within IAI46_17740at 3740.479 kb on - strand, within IAI46_17740at 3740.544 kb on + strand, within IAI46_17740at 3740.546 kb on + strand, within IAI46_17740at 3740.546 kb on + strand, within IAI46_17740at 3740.547 kb on - strand, within IAI46_17740at 3740.579 kb on + strand, within IAI46_17740at 3740.579 kb on + strand, within IAI46_17740at 3740.579 kb on + strand, within IAI46_17740at 3740.580 kb on - strand, within IAI46_17740at 3740.644 kb on - strand, within IAI46_17740at 3740.644 kb on - strand, within IAI46_17740at 3740.709 kb on + strand, within IAI46_17740at 3740.852 kb on + strandat 3740.852 kb on + strandat 3740.853 kb on - strandat 3740.853 kb on - strandat 3740.945 kb on + strandat 3741.038 kb on - strandat 3741.043 kb on + strandat 3741.043 kb on + strandat 3741.065 kb on + strandat 3741.113 kb on - strand, within IAI46_17745at 3741.171 kb on + strand, within IAI46_17745at 3741.172 kb on - strand, within IAI46_17745at 3741.172 kb on - strand, within IAI46_17745at 3741.172 kb on - strand, within IAI46_17745at 3741.327 kb on - strand, within IAI46_17745at 3741.347 kb on + strand, within IAI46_17745at 3741.436 kb on + strand, within IAI46_17745at 3741.436 kb on + strand, within IAI46_17745at 3741.437 kb on - strand, within IAI46_17745at 3741.437 kb on - strand, within IAI46_17745at 3741.471 kb on + strandat 3741.503 kb on - strandat 3741.544 kb on + strandat 3741.545 kb on - strandat 3741.602 kb on + strandat 3741.603 kb on - strandat 3741.635 kb on + strandat 3741.635 kb on + strandat 3741.820 kb on + strandat 3741.834 kb on - strandat 3741.837 kb on + strandat 3741.837 kb on + strandat 3741.838 kb on - strandat 3741.841 kb on + strandat 3741.845 kb on + strandat 3741.861 kb on - strandat 3741.865 kb on + strandat 3741.909 kb on - strandat 3742.056 kb on + strand, within IAI46_17750at 3742.056 kb on + strand, within IAI46_17750at 3742.057 kb on - strand, within IAI46_17750at 3742.064 kb on + strand, within IAI46_17750at 3742.065 kb on - strand, within IAI46_17750at 3742.065 kb on - strand, within IAI46_17750at 3742.070 kb on + strand, within IAI46_17750at 3742.070 kb on + strand, within IAI46_17750at 3742.163 kb on - strand, within IAI46_17750at 3742.335 kb on + strand, within IAI46_17750at 3742.341 kb on + strand, within IAI46_17750at 3742.354 kb on - strand, within IAI46_17750

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,740,049 + IAI46_17735 0.49 -0.7
3,740,219 + IAI46_17735 0.75 -0.2
3,740,238 - IAI46_17735 0.78 +0.7
3,740,258 + IAI46_17735 0.81 +0.4
3,740,323 - +0.5
3,740,444 + -0.2
3,740,470 - IAI46_17740 0.14 +0.5
3,740,470 - IAI46_17740 0.14 -0.4
3,740,478 + IAI46_17740 0.16 -0.8
3,740,478 + IAI46_17740 0.16 +0.2
3,740,479 - IAI46_17740 0.16 +1.0
3,740,544 + IAI46_17740 0.29 -0.1
3,740,546 + IAI46_17740 0.29 -0.2
3,740,546 + IAI46_17740 0.29 -0.3
3,740,547 - IAI46_17740 0.29 +0.9
3,740,579 + IAI46_17740 0.36 -0.2
3,740,579 + IAI46_17740 0.36 +0.5
3,740,579 + IAI46_17740 0.36 -1.0
3,740,580 - IAI46_17740 0.36 +0.0
3,740,644 - IAI46_17740 0.49 +0.7
3,740,644 - IAI46_17740 0.49 +0.5
3,740,709 + IAI46_17740 0.62 -0.6
3,740,852 + +0.0
3,740,852 + -0.4
3,740,853 - -0.5
3,740,853 - -1.2
3,740,945 + +0.1
3,741,038 - -0.1
3,741,043 + +0.4
3,741,043 + -1.5
3,741,065 + +0.5
3,741,113 - IAI46_17745 0.16 +0.8
3,741,171 + IAI46_17745 0.28 -0.7
3,741,172 - IAI46_17745 0.29 -1.2
3,741,172 - IAI46_17745 0.29 +0.6
3,741,172 - IAI46_17745 0.29 -0.8
3,741,327 - IAI46_17745 0.62 +0.3
3,741,347 + IAI46_17745 0.67 -0.1
3,741,436 + IAI46_17745 0.86 +0.0
3,741,436 + IAI46_17745 0.86 +0.8
3,741,437 - IAI46_17745 0.87 +0.6
3,741,437 - IAI46_17745 0.87 +0.1
3,741,471 + -1.1
3,741,503 - +0.6
3,741,544 + -0.1
3,741,545 - +0.5
3,741,602 + +0.8
3,741,603 - +0.4
3,741,635 + +0.6
3,741,635 + +0.7
3,741,820 + +1.0
3,741,834 - +1.2
3,741,837 + -0.2
3,741,837 + +0.7
3,741,838 - -0.0
3,741,841 + +0.4
3,741,845 + -0.9
3,741,861 - +0.1
3,741,865 + +0.2
3,741,909 - +1.8
3,742,056 + IAI46_17750 0.17 -0.0
3,742,056 + IAI46_17750 0.17 +0.0
3,742,057 - IAI46_17750 0.17 -1.2
3,742,064 + IAI46_17750 0.18 +0.8
3,742,065 - IAI46_17750 0.18 -0.0
3,742,065 - IAI46_17750 0.18 -1.1
3,742,070 + IAI46_17750 0.18 -0.5
3,742,070 + IAI46_17750 0.18 +0.2
3,742,163 - IAI46_17750 0.26 +0.8
3,742,335 + IAI46_17750 0.40 +0.3
3,742,341 + IAI46_17750 0.41 +0.2
3,742,354 - IAI46_17750 0.42 +1.1

Or see this region's nucleotide sequence