Strain Fitness in Serratia liquefaciens MT49 around IAI46_16870

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16865 and IAI46_16870 are separated by 258 nucleotidesIAI46_16870 and IAI46_16875 overlap by 4 nucleotides IAI46_16865: IAI46_16865 - sugar glycosyltransferase, at 3,535,135 to 3,536,043 _16865 IAI46_16870: IAI46_16870 - alkylhydroperoxidase domain protein, at 3,536,302 to 3,537,420 _16870 IAI46_16875: IAI46_16875 - putative FMN-dependent luciferase-like monooxygenase, at 3,537,417 to 3,538,463 _16875 Position (kb) 3536 3537 3538Strain fitness (log2 ratio) -1 0 1 2at 3535.375 kb on + strand, within IAI46_16865at 3535.418 kb on + strand, within IAI46_16865at 3535.419 kb on - strand, within IAI46_16865at 3535.521 kb on - strand, within IAI46_16865at 3535.627 kb on - strand, within IAI46_16865at 3535.813 kb on - strand, within IAI46_16865at 3535.856 kb on - strand, within IAI46_16865at 3535.897 kb on + strand, within IAI46_16865at 3535.899 kb on + strand, within IAI46_16865at 3535.899 kb on + strand, within IAI46_16865at 3535.899 kb on + strand, within IAI46_16865at 3535.919 kb on + strand, within IAI46_16865at 3536.013 kb on - strandat 3536.028 kb on + strandat 3536.046 kb on + strandat 3536.060 kb on - strandat 3536.106 kb on + strandat 3536.106 kb on + strandat 3536.107 kb on - strandat 3536.122 kb on - strandat 3536.122 kb on - strandat 3536.238 kb on + strandat 3536.245 kb on + strandat 3536.609 kb on + strand, within IAI46_16870at 3536.609 kb on + strand, within IAI46_16870at 3536.610 kb on - strand, within IAI46_16870at 3536.610 kb on - strand, within IAI46_16870at 3536.610 kb on - strand, within IAI46_16870at 3536.661 kb on + strand, within IAI46_16870at 3536.662 kb on - strand, within IAI46_16870at 3537.188 kb on + strand, within IAI46_16870at 3537.300 kb on - strand, within IAI46_16870at 3537.300 kb on - strand, within IAI46_16870at 3537.445 kb on + strandat 3537.516 kb on - strandat 3537.549 kb on - strand, within IAI46_16875at 3537.829 kb on + strand, within IAI46_16875at 3537.830 kb on - strand, within IAI46_16875at 3537.899 kb on + strand, within IAI46_16875

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,535,375 + IAI46_16865 0.26 -0.6
3,535,418 + IAI46_16865 0.31 -0.7
3,535,419 - IAI46_16865 0.31 +0.1
3,535,521 - IAI46_16865 0.42 +0.6
3,535,627 - IAI46_16865 0.54 +0.7
3,535,813 - IAI46_16865 0.75 +0.4
3,535,856 - IAI46_16865 0.79 -0.1
3,535,897 + IAI46_16865 0.84 -0.1
3,535,899 + IAI46_16865 0.84 -1.0
3,535,899 + IAI46_16865 0.84 +1.8
3,535,899 + IAI46_16865 0.84 +0.4
3,535,919 + IAI46_16865 0.86 +0.4
3,536,013 - -0.3
3,536,028 + +0.5
3,536,046 + -0.9
3,536,060 - -1.2
3,536,106 + +0.6
3,536,106 + +0.6
3,536,107 - +0.3
3,536,122 - -1.2
3,536,122 - +1.2
3,536,238 + -0.7
3,536,245 + +0.0
3,536,609 + IAI46_16870 0.27 -0.7
3,536,609 + IAI46_16870 0.27 +0.3
3,536,610 - IAI46_16870 0.28 +0.3
3,536,610 - IAI46_16870 0.28 -0.7
3,536,610 - IAI46_16870 0.28 +0.3
3,536,661 + IAI46_16870 0.32 +0.9
3,536,662 - IAI46_16870 0.32 +0.2
3,537,188 + IAI46_16870 0.79 -1.2
3,537,300 - IAI46_16870 0.89 +0.6
3,537,300 - IAI46_16870 0.89 +0.6
3,537,445 + +0.1
3,537,516 - +0.6
3,537,549 - IAI46_16875 0.13 +0.2
3,537,829 + IAI46_16875 0.39 +0.0
3,537,830 - IAI46_16875 0.39 -0.5
3,537,899 + IAI46_16875 0.46 -0.1

Or see this region's nucleotide sequence