Strain Fitness in Serratia liquefaciens MT49 around IAI46_16140

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16135 and IAI46_16140 are separated by 256 nucleotidesIAI46_16140 and IAI46_16145 are separated by 723 nucleotides IAI46_16135: IAI46_16135 - aminopeptidase P family protein, at 3,383,435 to 3,384,652 _16135 IAI46_16140: IAI46_16140 - hypothetical protein, at 3,384,909 to 3,385,259 _16140 IAI46_16145: IAI46_16145 - Dyp-type peroxidase, at 3,385,983 to 3,386,939 _16145 Position (kb) 3384 3385 3386Strain fitness (log2 ratio) -2 -1 0 1at 3383.998 kb on + strand, within IAI46_16135at 3384.110 kb on + strand, within IAI46_16135at 3384.185 kb on - strand, within IAI46_16135at 3384.227 kb on + strand, within IAI46_16135at 3384.227 kb on + strand, within IAI46_16135at 3384.228 kb on - strand, within IAI46_16135at 3384.251 kb on + strand, within IAI46_16135at 3384.251 kb on + strand, within IAI46_16135at 3384.258 kb on - strand, within IAI46_16135at 3384.540 kb on + strandat 3384.540 kb on + strandat 3384.632 kb on - strandat 3384.775 kb on + strandat 3384.874 kb on - strandat 3384.875 kb on + strandat 3385.041 kb on + strand, within IAI46_16140at 3385.042 kb on - strand, within IAI46_16140at 3385.045 kb on - strand, within IAI46_16140at 3385.049 kb on + strand, within IAI46_16140at 3385.198 kb on + strand, within IAI46_16140at 3385.198 kb on + strand, within IAI46_16140at 3385.198 kb on + strand, within IAI46_16140at 3385.198 kb on + strand, within IAI46_16140at 3385.199 kb on - strand, within IAI46_16140at 3385.257 kb on + strandat 3385.279 kb on + strandat 3385.448 kb on + strandat 3385.449 kb on - strandat 3385.602 kb on - strandat 3385.609 kb on - strandat 3385.612 kb on - strandat 3385.623 kb on + strandat 3385.752 kb on - strandat 3385.850 kb on - strandat 3385.942 kb on - strandat 3385.942 kb on - strandat 3385.952 kb on + strandat 3385.953 kb on - strandat 3385.982 kb on + strandat 3385.982 kb on + strandat 3385.982 kb on + strandat 3385.983 kb on - strandat 3385.983 kb on - strandat 3385.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,383,998 + IAI46_16135 0.46 -0.5
3,384,110 + IAI46_16135 0.55 +0.7
3,384,185 - IAI46_16135 0.62 -0.1
3,384,227 + IAI46_16135 0.65 +0.8
3,384,227 + IAI46_16135 0.65 +1.6
3,384,228 - IAI46_16135 0.65 -0.5
3,384,251 + IAI46_16135 0.67 +0.6
3,384,251 + IAI46_16135 0.67 -1.2
3,384,258 - IAI46_16135 0.68 -0.8
3,384,540 + +0.5
3,384,540 + -0.1
3,384,632 - -1.0
3,384,775 + -0.8
3,384,874 - -0.8
3,384,875 + +0.0
3,385,041 + IAI46_16140 0.38 -0.5
3,385,042 - IAI46_16140 0.38 +0.5
3,385,045 - IAI46_16140 0.39 -1.5
3,385,049 + IAI46_16140 0.40 -0.7
3,385,198 + IAI46_16140 0.82 -0.3
3,385,198 + IAI46_16140 0.82 -0.1
3,385,198 + IAI46_16140 0.82 +0.3
3,385,198 + IAI46_16140 0.82 +1.7
3,385,199 - IAI46_16140 0.83 +1.5
3,385,257 + -0.6
3,385,279 + +0.1
3,385,448 + +1.5
3,385,449 - -2.0
3,385,602 - -0.0
3,385,609 - +0.5
3,385,612 - -0.5
3,385,623 + -0.1
3,385,752 - -0.3
3,385,850 - +0.4
3,385,942 - -0.3
3,385,942 - -0.3
3,385,952 + +0.2
3,385,953 - -0.3
3,385,982 + -0.7
3,385,982 + +0.2
3,385,982 + -0.2
3,385,983 - +0.3
3,385,983 - +0.1
3,385,983 - +0.9

Or see this region's nucleotide sequence