Strain Fitness in Serratia liquefaciens MT49 around IAI46_16075

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16065 and IAI46_16070 are separated by 151 nucleotidesIAI46_16070 and IAI46_16075 are separated by 77 nucleotidesIAI46_16075 and IAI46_16080 are separated by 44 nucleotidesIAI46_16080 and IAI46_16085 are separated by 98 nucleotides IAI46_16065: IAI46_16065 - transcription modulator YdgT, at 3,370,569 to 3,370,784 _16065 IAI46_16070: IAI46_16070 - universal stress protein UspC, at 3,370,936 to 3,371,355 _16070 IAI46_16075: IAI46_16075 - NADP-dependent oxidoreductase, at 3,371,433 to 3,372,467 _16075 IAI46_16080: IAI46_16080 - pyroglutamyl-peptidase I, at 3,372,512 to 3,373,159 _16080 IAI46_16085: IAI46_16085 - LysR family transcriptional regulator, at 3,373,258 to 3,374,187 _16085 Position (kb) 3371 3372 3373Strain fitness (log2 ratio) -1 0 1 2at 3370.565 kb on - strandat 3370.565 kb on - strandat 3370.587 kb on + strandat 3370.587 kb on + strandat 3370.588 kb on - strandat 3370.604 kb on + strand, within IAI46_16065at 3370.808 kb on + strandat 3370.808 kb on + strandat 3370.813 kb on + strandat 3370.831 kb on - strandat 3370.831 kb on - strandat 3370.853 kb on - strandat 3371.015 kb on + strand, within IAI46_16070at 3371.015 kb on + strand, within IAI46_16070at 3371.016 kb on - strand, within IAI46_16070at 3371.026 kb on - strand, within IAI46_16070at 3371.045 kb on + strand, within IAI46_16070at 3371.046 kb on - strand, within IAI46_16070at 3371.076 kb on + strand, within IAI46_16070at 3371.221 kb on + strand, within IAI46_16070at 3371.314 kb on - strandat 3371.319 kb on + strandat 3371.353 kb on + strandat 3371.368 kb on + strandat 3371.369 kb on - strandat 3371.403 kb on + strandat 3371.403 kb on + strandat 3371.403 kb on + strandat 3371.404 kb on - strandat 3371.404 kb on - strandat 3371.421 kb on - strandat 3371.558 kb on - strand, within IAI46_16075at 3371.558 kb on - strand, within IAI46_16075at 3371.571 kb on + strand, within IAI46_16075at 3371.590 kb on - strand, within IAI46_16075at 3371.722 kb on + strand, within IAI46_16075at 3371.722 kb on + strand, within IAI46_16075at 3371.723 kb on - strand, within IAI46_16075at 3371.745 kb on + strand, within IAI46_16075at 3371.746 kb on - strand, within IAI46_16075at 3371.770 kb on + strand, within IAI46_16075at 3371.771 kb on - strand, within IAI46_16075at 3371.845 kb on - strand, within IAI46_16075at 3371.846 kb on + strand, within IAI46_16075at 3371.846 kb on + strand, within IAI46_16075at 3371.846 kb on + strand, within IAI46_16075at 3371.847 kb on - strand, within IAI46_16075at 3371.997 kb on + strand, within IAI46_16075at 3372.161 kb on + strand, within IAI46_16075at 3372.191 kb on + strand, within IAI46_16075at 3372.191 kb on + strand, within IAI46_16075at 3372.191 kb on + strand, within IAI46_16075at 3372.191 kb on + strand, within IAI46_16075at 3372.191 kb on + strand, within IAI46_16075at 3372.192 kb on - strand, within IAI46_16075at 3372.192 kb on - strand, within IAI46_16075at 3372.192 kb on - strand, within IAI46_16075at 3372.250 kb on + strand, within IAI46_16075at 3372.266 kb on + strand, within IAI46_16075at 3372.267 kb on - strand, within IAI46_16075at 3372.466 kb on - strandat 3372.539 kb on + strandat 3372.540 kb on - strandat 3372.565 kb on + strandat 3372.565 kb on + strandat 3372.566 kb on - strandat 3372.575 kb on - strandat 3372.582 kb on - strand, within IAI46_16080at 3372.652 kb on - strand, within IAI46_16080at 3372.665 kb on - strand, within IAI46_16080at 3372.736 kb on + strand, within IAI46_16080at 3372.738 kb on + strand, within IAI46_16080at 3372.738 kb on + strand, within IAI46_16080at 3372.786 kb on - strand, within IAI46_16080at 3373.092 kb on - strand, within IAI46_16080at 3373.109 kb on - strandat 3373.233 kb on + strandat 3373.237 kb on + strandat 3373.237 kb on + strandat 3373.238 kb on - strandat 3373.241 kb on + strandat 3373.241 kb on + strandat 3373.241 kb on + strandat 3373.242 kb on - strandat 3373.242 kb on - strandat 3373.242 kb on - strandat 3373.242 kb on - strandat 3373.244 kb on - strandat 3373.244 kb on - strandat 3373.249 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,370,565 - -0.6
3,370,565 - +0.8
3,370,587 + +0.1
3,370,587 + -0.5
3,370,588 - +0.2
3,370,604 + IAI46_16065 0.16 +0.1
3,370,808 + -0.3
3,370,808 + +1.0
3,370,813 + +1.7
3,370,831 - -1.2
3,370,831 - -0.7
3,370,853 - -0.3
3,371,015 + IAI46_16070 0.19 +1.8
3,371,015 + IAI46_16070 0.19 +0.3
3,371,016 - IAI46_16070 0.19 +0.8
3,371,026 - IAI46_16070 0.21 +0.2
3,371,045 + IAI46_16070 0.26 -1.1
3,371,046 - IAI46_16070 0.26 +0.3
3,371,076 + IAI46_16070 0.33 +0.9
3,371,221 + IAI46_16070 0.68 -0.9
3,371,314 - -0.2
3,371,319 + -1.1
3,371,353 + +0.7
3,371,368 + +0.7
3,371,369 - +0.4
3,371,403 + +0.5
3,371,403 + -1.3
3,371,403 + +0.5
3,371,404 - +0.0
3,371,404 - +0.3
3,371,421 - +0.8
3,371,558 - IAI46_16075 0.12 +0.9
3,371,558 - IAI46_16075 0.12 +0.2
3,371,571 + IAI46_16075 0.13 +0.7
3,371,590 - IAI46_16075 0.15 +1.5
3,371,722 + IAI46_16075 0.28 -1.0
3,371,722 + IAI46_16075 0.28 -0.8
3,371,723 - IAI46_16075 0.28 -0.2
3,371,745 + IAI46_16075 0.30 +0.7
3,371,746 - IAI46_16075 0.30 +0.4
3,371,770 + IAI46_16075 0.33 +0.2
3,371,771 - IAI46_16075 0.33 +0.7
3,371,845 - IAI46_16075 0.40 -0.7
3,371,846 + IAI46_16075 0.40 -1.0
3,371,846 + IAI46_16075 0.40 +0.3
3,371,846 + IAI46_16075 0.40 +0.2
3,371,847 - IAI46_16075 0.40 -0.2
3,371,997 + IAI46_16075 0.54 +0.1
3,372,161 + IAI46_16075 0.70 -0.9
3,372,191 + IAI46_16075 0.73 +0.5
3,372,191 + IAI46_16075 0.73 +0.9
3,372,191 + IAI46_16075 0.73 +0.1
3,372,191 + IAI46_16075 0.73 +0.6
3,372,191 + IAI46_16075 0.73 +2.0
3,372,192 - IAI46_16075 0.73 -0.3
3,372,192 - IAI46_16075 0.73 -0.3
3,372,192 - IAI46_16075 0.73 -0.8
3,372,250 + IAI46_16075 0.79 +0.5
3,372,266 + IAI46_16075 0.80 +0.0
3,372,267 - IAI46_16075 0.81 +0.5
3,372,466 - +0.5
3,372,539 + +1.0
3,372,540 - +1.7
3,372,565 + -0.1
3,372,565 + +0.5
3,372,566 - -0.3
3,372,575 - +0.2
3,372,582 - IAI46_16080 0.11 +0.9
3,372,652 - IAI46_16080 0.22 +0.3
3,372,665 - IAI46_16080 0.24 +0.1
3,372,736 + IAI46_16080 0.35 +1.1
3,372,738 + IAI46_16080 0.35 +1.1
3,372,738 + IAI46_16080 0.35 +0.4
3,372,786 - IAI46_16080 0.42 -1.5
3,373,092 - IAI46_16080 0.90 +0.2
3,373,109 - +1.2
3,373,233 + -0.8
3,373,237 + +0.0
3,373,237 + +1.5
3,373,238 - -0.3
3,373,241 + +1.1
3,373,241 + -0.9
3,373,241 + +1.2
3,373,242 - -0.0
3,373,242 - +0.3
3,373,242 - -0.3
3,373,242 - +0.4
3,373,244 - +0.2
3,373,244 - +0.3
3,373,249 - +0.3

Or see this region's nucleotide sequence