Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_16065 and IAI46_16070 are separated by 151 nucleotides IAI46_16070 and IAI46_16075 are separated by 77 nucleotides IAI46_16075 and IAI46_16080 are separated by 44 nucleotides IAI46_16080 and IAI46_16085 are separated by 98 nucleotides
IAI46_16065: IAI46_16065 - transcription modulator YdgT, at 3,370,569 to 3,370,784
_16065
IAI46_16070: IAI46_16070 - universal stress protein UspC, at 3,370,936 to 3,371,355
_16070
IAI46_16075: IAI46_16075 - NADP-dependent oxidoreductase, at 3,371,433 to 3,372,467
_16075
IAI46_16080: IAI46_16080 - pyroglutamyl-peptidase I, at 3,372,512 to 3,373,159
_16080
IAI46_16085: IAI46_16085 - LysR family transcriptional regulator, at 3,373,258 to 3,374,187
_16085
Position (kb)
3371
3372
3373 Strain fitness (log2 ratio)
-1
0
1
2 at 3370.565 kb on - strand at 3370.565 kb on - strand at 3370.587 kb on + strand at 3370.587 kb on + strand at 3370.588 kb on - strand at 3370.604 kb on + strand, within IAI46_16065 at 3370.808 kb on + strand at 3370.808 kb on + strand at 3370.813 kb on + strand at 3370.831 kb on - strand at 3370.831 kb on - strand at 3370.853 kb on - strand at 3371.015 kb on + strand, within IAI46_16070 at 3371.015 kb on + strand, within IAI46_16070 at 3371.016 kb on - strand, within IAI46_16070 at 3371.026 kb on - strand, within IAI46_16070 at 3371.045 kb on + strand, within IAI46_16070 at 3371.046 kb on - strand, within IAI46_16070 at 3371.076 kb on + strand, within IAI46_16070 at 3371.221 kb on + strand, within IAI46_16070 at 3371.314 kb on - strand at 3371.319 kb on + strand at 3371.353 kb on + strand at 3371.368 kb on + strand at 3371.369 kb on - strand at 3371.403 kb on + strand at 3371.403 kb on + strand at 3371.403 kb on + strand at 3371.404 kb on - strand at 3371.404 kb on - strand at 3371.421 kb on - strand at 3371.558 kb on - strand, within IAI46_16075 at 3371.558 kb on - strand, within IAI46_16075 at 3371.571 kb on + strand, within IAI46_16075 at 3371.590 kb on - strand, within IAI46_16075 at 3371.722 kb on + strand, within IAI46_16075 at 3371.722 kb on + strand, within IAI46_16075 at 3371.723 kb on - strand, within IAI46_16075 at 3371.745 kb on + strand, within IAI46_16075 at 3371.746 kb on - strand, within IAI46_16075 at 3371.770 kb on + strand, within IAI46_16075 at 3371.771 kb on - strand, within IAI46_16075 at 3371.845 kb on - strand, within IAI46_16075 at 3371.846 kb on + strand, within IAI46_16075 at 3371.846 kb on + strand, within IAI46_16075 at 3371.846 kb on + strand, within IAI46_16075 at 3371.847 kb on - strand, within IAI46_16075 at 3371.997 kb on + strand, within IAI46_16075 at 3372.161 kb on + strand, within IAI46_16075 at 3372.191 kb on + strand, within IAI46_16075 at 3372.191 kb on + strand, within IAI46_16075 at 3372.191 kb on + strand, within IAI46_16075 at 3372.191 kb on + strand, within IAI46_16075 at 3372.191 kb on + strand, within IAI46_16075 at 3372.192 kb on - strand, within IAI46_16075 at 3372.192 kb on - strand, within IAI46_16075 at 3372.192 kb on - strand, within IAI46_16075 at 3372.250 kb on + strand, within IAI46_16075 at 3372.266 kb on + strand, within IAI46_16075 at 3372.267 kb on - strand, within IAI46_16075 at 3372.466 kb on - strand at 3372.539 kb on + strand at 3372.540 kb on - strand at 3372.565 kb on + strand at 3372.565 kb on + strand at 3372.566 kb on - strand at 3372.575 kb on - strand at 3372.582 kb on - strand, within IAI46_16080 at 3372.652 kb on - strand, within IAI46_16080 at 3372.665 kb on - strand, within IAI46_16080 at 3372.736 kb on + strand, within IAI46_16080 at 3372.738 kb on + strand, within IAI46_16080 at 3372.738 kb on + strand, within IAI46_16080 at 3372.786 kb on - strand, within IAI46_16080 at 3373.092 kb on - strand, within IAI46_16080 at 3373.109 kb on - strand at 3373.233 kb on + strand at 3373.237 kb on + strand at 3373.237 kb on + strand at 3373.238 kb on - strand at 3373.241 kb on + strand at 3373.241 kb on + strand at 3373.241 kb on + strand at 3373.242 kb on - strand at 3373.242 kb on - strand at 3373.242 kb on - strand at 3373.242 kb on - strand at 3373.244 kb on - strand at 3373.244 kb on - strand at 3373.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 3,370,565 - -0.6 3,370,565 - +0.8 3,370,587 + +0.1 3,370,587 + -0.5 3,370,588 - +0.2 3,370,604 + IAI46_16065 0.16 +0.1 3,370,808 + -0.3 3,370,808 + +1.0 3,370,813 + +1.7 3,370,831 - -1.2 3,370,831 - -0.7 3,370,853 - -0.3 3,371,015 + IAI46_16070 0.19 +1.8 3,371,015 + IAI46_16070 0.19 +0.3 3,371,016 - IAI46_16070 0.19 +0.8 3,371,026 - IAI46_16070 0.21 +0.2 3,371,045 + IAI46_16070 0.26 -1.1 3,371,046 - IAI46_16070 0.26 +0.3 3,371,076 + IAI46_16070 0.33 +0.9 3,371,221 + IAI46_16070 0.68 -0.9 3,371,314 - -0.2 3,371,319 + -1.1 3,371,353 + +0.7 3,371,368 + +0.7 3,371,369 - +0.4 3,371,403 + +0.5 3,371,403 + -1.3 3,371,403 + +0.5 3,371,404 - +0.0 3,371,404 - +0.3 3,371,421 - +0.8 3,371,558 - IAI46_16075 0.12 +0.9 3,371,558 - IAI46_16075 0.12 +0.2 3,371,571 + IAI46_16075 0.13 +0.7 3,371,590 - IAI46_16075 0.15 +1.5 3,371,722 + IAI46_16075 0.28 -1.0 3,371,722 + IAI46_16075 0.28 -0.8 3,371,723 - IAI46_16075 0.28 -0.2 3,371,745 + IAI46_16075 0.30 +0.7 3,371,746 - IAI46_16075 0.30 +0.4 3,371,770 + IAI46_16075 0.33 +0.2 3,371,771 - IAI46_16075 0.33 +0.7 3,371,845 - IAI46_16075 0.40 -0.7 3,371,846 + IAI46_16075 0.40 -1.0 3,371,846 + IAI46_16075 0.40 +0.3 3,371,846 + IAI46_16075 0.40 +0.2 3,371,847 - IAI46_16075 0.40 -0.2 3,371,997 + IAI46_16075 0.54 +0.1 3,372,161 + IAI46_16075 0.70 -0.9 3,372,191 + IAI46_16075 0.73 +0.5 3,372,191 + IAI46_16075 0.73 +0.9 3,372,191 + IAI46_16075 0.73 +0.1 3,372,191 + IAI46_16075 0.73 +0.6 3,372,191 + IAI46_16075 0.73 +2.0 3,372,192 - IAI46_16075 0.73 -0.3 3,372,192 - IAI46_16075 0.73 -0.3 3,372,192 - IAI46_16075 0.73 -0.8 3,372,250 + IAI46_16075 0.79 +0.5 3,372,266 + IAI46_16075 0.80 +0.0 3,372,267 - IAI46_16075 0.81 +0.5 3,372,466 - +0.5 3,372,539 + +1.0 3,372,540 - +1.7 3,372,565 + -0.1 3,372,565 + +0.5 3,372,566 - -0.3 3,372,575 - +0.2 3,372,582 - IAI46_16080 0.11 +0.9 3,372,652 - IAI46_16080 0.22 +0.3 3,372,665 - IAI46_16080 0.24 +0.1 3,372,736 + IAI46_16080 0.35 +1.1 3,372,738 + IAI46_16080 0.35 +1.1 3,372,738 + IAI46_16080 0.35 +0.4 3,372,786 - IAI46_16080 0.42 -1.5 3,373,092 - IAI46_16080 0.90 +0.2 3,373,109 - +1.2 3,373,233 + -0.8 3,373,237 + +0.0 3,373,237 + +1.5 3,373,238 - -0.3 3,373,241 + +1.1 3,373,241 + -0.9 3,373,241 + +1.2 3,373,242 - -0.0 3,373,242 - +0.3 3,373,242 - -0.3 3,373,242 - +0.4 3,373,244 - +0.2 3,373,244 - +0.3 3,373,249 - +0.3
Or see this region's nucleotide sequence