Strain Fitness in Serratia liquefaciens MT49 around IAI46_15950

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15945 and IAI46_15950 are separated by 186 nucleotidesIAI46_15950 and IAI46_15955 are separated by 12 nucleotidesIAI46_15955 and IAI46_15960 are separated by 5 nucleotidesIAI46_15960 and IAI46_15965 are separated by 163 nucleotides IAI46_15945: IAI46_15945 - flagellar hook protein FlgE, at 3,346,500 to 3,347,723 _15945 IAI46_15950: IAI46_15950 - flagellar hook assembly protein FlgD, at 3,347,910 to 3,348,587 _15950 IAI46_15955: IAI46_15955 - flagellar basal body rod protein FlgC, at 3,348,600 to 3,349,004 _15955 IAI46_15960: IAI46_15960 - flagellar basal body rod protein FlgB, at 3,349,010 to 3,349,423 _15960 IAI46_15965: IAI46_15965 - flagellar basal body P-ring formation protein FlgA, at 3,349,587 to 3,350,240 _15965 Position (kb) 3347 3348 3349Strain fitness (log2 ratio) -1 0 1at 3347.064 kb on + strand, within IAI46_15945at 3347.091 kb on - strand, within IAI46_15945at 3347.092 kb on + strand, within IAI46_15945at 3347.150 kb on + strand, within IAI46_15945at 3347.164 kb on + strand, within IAI46_15945at 3347.165 kb on - strand, within IAI46_15945at 3347.165 kb on - strand, within IAI46_15945at 3347.186 kb on - strand, within IAI46_15945at 3347.191 kb on + strand, within IAI46_15945at 3347.191 kb on + strand, within IAI46_15945at 3347.191 kb on + strand, within IAI46_15945at 3347.237 kb on + strand, within IAI46_15945at 3347.237 kb on + strand, within IAI46_15945at 3347.443 kb on + strand, within IAI46_15945at 3347.769 kb on + strandat 3347.770 kb on - strandat 3347.780 kb on + strandat 3347.782 kb on + strandat 3347.783 kb on - strandat 3347.838 kb on + strandat 3347.839 kb on - strandat 3347.847 kb on - strandat 3347.847 kb on - strandat 3347.847 kb on - strandat 3347.904 kb on - strandat 3347.904 kb on - strandat 3348.062 kb on + strand, within IAI46_15950at 3348.243 kb on - strand, within IAI46_15950at 3348.402 kb on - strand, within IAI46_15950at 3348.671 kb on - strand, within IAI46_15955at 3348.723 kb on - strand, within IAI46_15955at 3348.736 kb on + strand, within IAI46_15955at 3348.736 kb on + strand, within IAI46_15955at 3348.736 kb on + strand, within IAI46_15955at 3348.773 kb on - strand, within IAI46_15955at 3349.012 kb on - strandat 3349.022 kb on + strandat 3349.023 kb on - strandat 3349.077 kb on + strand, within IAI46_15960at 3349.077 kb on + strand, within IAI46_15960at 3349.078 kb on - strand, within IAI46_15960at 3349.208 kb on - strand, within IAI46_15960at 3349.462 kb on - strandat 3349.516 kb on + strandat 3349.517 kb on - strandat 3349.550 kb on + strandat 3349.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,347,064 + IAI46_15945 0.46 -0.1
3,347,091 - IAI46_15945 0.48 +0.3
3,347,092 + IAI46_15945 0.48 -0.8
3,347,150 + IAI46_15945 0.53 +0.3
3,347,164 + IAI46_15945 0.54 +0.7
3,347,165 - IAI46_15945 0.54 +0.3
3,347,165 - IAI46_15945 0.54 -0.4
3,347,186 - IAI46_15945 0.56 -0.1
3,347,191 + IAI46_15945 0.56 -0.1
3,347,191 + IAI46_15945 0.56 +0.3
3,347,191 + IAI46_15945 0.56 +0.3
3,347,237 + IAI46_15945 0.60 +0.1
3,347,237 + IAI46_15945 0.60 +0.4
3,347,443 + IAI46_15945 0.77 -0.4
3,347,769 + +0.1
3,347,770 - -0.3
3,347,780 + +0.1
3,347,782 + -0.3
3,347,783 - +0.7
3,347,838 + +0.8
3,347,839 - +0.1
3,347,847 - +0.2
3,347,847 - -0.1
3,347,847 - +1.7
3,347,904 - +0.2
3,347,904 - -0.1
3,348,062 + IAI46_15950 0.22 +0.4
3,348,243 - IAI46_15950 0.49 +0.4
3,348,402 - IAI46_15950 0.73 +0.7
3,348,671 - IAI46_15955 0.18 +0.4
3,348,723 - IAI46_15955 0.30 +0.5
3,348,736 + IAI46_15955 0.34 +1.2
3,348,736 + IAI46_15955 0.34 +0.1
3,348,736 + IAI46_15955 0.34 +0.3
3,348,773 - IAI46_15955 0.43 +0.3
3,349,012 - +0.6
3,349,022 + -0.4
3,349,023 - -0.4
3,349,077 + IAI46_15960 0.16 -0.5
3,349,077 + IAI46_15960 0.16 +0.5
3,349,078 - IAI46_15960 0.16 -0.1
3,349,208 - IAI46_15960 0.48 +0.6
3,349,462 - +0.3
3,349,516 + +0.1
3,349,517 - -0.0
3,349,550 + +0.9
3,349,551 - +0.2

Or see this region's nucleotide sequence