Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_15945 and IAI46_15950 are separated by 186 nucleotides IAI46_15950 and IAI46_15955 are separated by 12 nucleotides IAI46_15955 and IAI46_15960 are separated by 5 nucleotides IAI46_15960 and IAI46_15965 are separated by 163 nucleotides
IAI46_15945: IAI46_15945 - flagellar hook protein FlgE, at 3,346,500 to 3,347,723
_15945
IAI46_15950: IAI46_15950 - flagellar hook assembly protein FlgD, at 3,347,910 to 3,348,587
_15950
IAI46_15955: IAI46_15955 - flagellar basal body rod protein FlgC, at 3,348,600 to 3,349,004
_15955
IAI46_15960: IAI46_15960 - flagellar basal body rod protein FlgB, at 3,349,010 to 3,349,423
_15960
IAI46_15965: IAI46_15965 - flagellar basal body P-ring formation protein FlgA, at 3,349,587 to 3,350,240
_15965
Position (kb)
3347
3348
3349 Strain fitness (log2 ratio)
-1
0
1 at 3347.064 kb on + strand, within IAI46_15945 at 3347.091 kb on - strand, within IAI46_15945 at 3347.092 kb on + strand, within IAI46_15945 at 3347.150 kb on + strand, within IAI46_15945 at 3347.164 kb on + strand, within IAI46_15945 at 3347.165 kb on - strand, within IAI46_15945 at 3347.165 kb on - strand, within IAI46_15945 at 3347.186 kb on - strand, within IAI46_15945 at 3347.191 kb on + strand, within IAI46_15945 at 3347.191 kb on + strand, within IAI46_15945 at 3347.191 kb on + strand, within IAI46_15945 at 3347.237 kb on + strand, within IAI46_15945 at 3347.237 kb on + strand, within IAI46_15945 at 3347.443 kb on + strand, within IAI46_15945 at 3347.769 kb on + strand at 3347.770 kb on - strand at 3347.780 kb on + strand at 3347.782 kb on + strand at 3347.783 kb on - strand at 3347.838 kb on + strand at 3347.839 kb on - strand at 3347.847 kb on - strand at 3347.847 kb on - strand at 3347.847 kb on - strand at 3347.904 kb on - strand at 3347.904 kb on - strand at 3348.062 kb on + strand, within IAI46_15950 at 3348.243 kb on - strand, within IAI46_15950 at 3348.402 kb on - strand, within IAI46_15950 at 3348.671 kb on - strand, within IAI46_15955 at 3348.723 kb on - strand, within IAI46_15955 at 3348.736 kb on + strand, within IAI46_15955 at 3348.736 kb on + strand, within IAI46_15955 at 3348.736 kb on + strand, within IAI46_15955 at 3348.773 kb on - strand, within IAI46_15955 at 3349.012 kb on - strand at 3349.022 kb on + strand at 3349.023 kb on - strand at 3349.077 kb on + strand, within IAI46_15960 at 3349.077 kb on + strand, within IAI46_15960 at 3349.078 kb on - strand, within IAI46_15960 at 3349.208 kb on - strand, within IAI46_15960 at 3349.462 kb on - strand at 3349.516 kb on + strand at 3349.517 kb on - strand at 3349.550 kb on + strand at 3349.551 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 3,347,064 + IAI46_15945 0.46 -0.1 3,347,091 - IAI46_15945 0.48 +0.3 3,347,092 + IAI46_15945 0.48 -0.8 3,347,150 + IAI46_15945 0.53 +0.3 3,347,164 + IAI46_15945 0.54 +0.7 3,347,165 - IAI46_15945 0.54 +0.3 3,347,165 - IAI46_15945 0.54 -0.4 3,347,186 - IAI46_15945 0.56 -0.1 3,347,191 + IAI46_15945 0.56 -0.1 3,347,191 + IAI46_15945 0.56 +0.3 3,347,191 + IAI46_15945 0.56 +0.3 3,347,237 + IAI46_15945 0.60 +0.1 3,347,237 + IAI46_15945 0.60 +0.4 3,347,443 + IAI46_15945 0.77 -0.4 3,347,769 + +0.1 3,347,770 - -0.3 3,347,780 + +0.1 3,347,782 + -0.3 3,347,783 - +0.7 3,347,838 + +0.8 3,347,839 - +0.1 3,347,847 - +0.2 3,347,847 - -0.1 3,347,847 - +1.7 3,347,904 - +0.2 3,347,904 - -0.1 3,348,062 + IAI46_15950 0.22 +0.4 3,348,243 - IAI46_15950 0.49 +0.4 3,348,402 - IAI46_15950 0.73 +0.7 3,348,671 - IAI46_15955 0.18 +0.4 3,348,723 - IAI46_15955 0.30 +0.5 3,348,736 + IAI46_15955 0.34 +1.2 3,348,736 + IAI46_15955 0.34 +0.1 3,348,736 + IAI46_15955 0.34 +0.3 3,348,773 - IAI46_15955 0.43 +0.3 3,349,012 - +0.6 3,349,022 + -0.4 3,349,023 - -0.4 3,349,077 + IAI46_15960 0.16 -0.5 3,349,077 + IAI46_15960 0.16 +0.5 3,349,078 - IAI46_15960 0.16 -0.1 3,349,208 - IAI46_15960 0.48 +0.6 3,349,462 - +0.3 3,349,516 + +0.1 3,349,517 - -0.0 3,349,550 + +0.9 3,349,551 - +0.2
Or see this region's nucleotide sequence