Strain Fitness in Serratia liquefaciens MT49 around IAI46_15745

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15740 and IAI46_15745 are separated by 556 nucleotidesIAI46_15745 and IAI46_15750 are separated by 166 nucleotidesIAI46_15750 and IAI46_15755 are separated by 29 nucleotidesIAI46_15755 and IAI46_15760 are separated by 31 nucleotides IAI46_15740: IAI46_15740 - sodium/proline symporter PutP, at 3,304,618 to 3,306,102 _15740 IAI46_15745: IAI46_15745 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 3,306,659 to 3,310,630 _15745 IAI46_15750: IAI46_15750 - type II toxin-antitoxin system HicA family toxin, at 3,310,797 to 3,310,979 _15750 IAI46_15755: IAI46_15755 - type II toxin-antitoxin system HicB family antitoxin, at 3,311,009 to 3,311,422 _15755 IAI46_15760: IAI46_15760 - L-cystine ABC transporter ATP-binding protein YecC, at 3,311,454 to 3,312,206 _15760 Position (kb) 3306 3307 3308 3309 3310 3311Strain fitness (log2 ratio) -1 0 1at 3305.684 kb on + strand, within IAI46_15740at 3305.684 kb on + strand, within IAI46_15740at 3305.684 kb on + strand, within IAI46_15740at 3305.685 kb on - strand, within IAI46_15740at 3305.685 kb on - strand, within IAI46_15740at 3305.685 kb on - strand, within IAI46_15740at 3305.688 kb on + strand, within IAI46_15740at 3305.688 kb on + strand, within IAI46_15740at 3305.863 kb on + strand, within IAI46_15740at 3306.000 kb on - strandat 3306.000 kb on - strandat 3306.027 kb on - strandat 3306.035 kb on - strandat 3306.060 kb on + strandat 3306.063 kb on - strandat 3306.124 kb on + strandat 3306.125 kb on - strandat 3306.136 kb on + strandat 3306.137 kb on - strandat 3306.148 kb on + strandat 3306.149 kb on - strandat 3306.149 kb on - strandat 3306.206 kb on - strandat 3306.243 kb on - strandat 3306.584 kb on + strandat 3306.615 kb on + strandat 3306.638 kb on + strandat 3306.639 kb on - strandat 3306.776 kb on + strandat 3306.860 kb on - strandat 3306.860 kb on - strandat 3307.008 kb on + strandat 3307.046 kb on + strandat 3307.100 kb on - strand, within IAI46_15745at 3307.330 kb on + strand, within IAI46_15745at 3307.512 kb on - strand, within IAI46_15745at 3307.622 kb on + strand, within IAI46_15745at 3307.622 kb on + strand, within IAI46_15745at 3307.623 kb on - strand, within IAI46_15745at 3307.623 kb on - strand, within IAI46_15745at 3307.695 kb on + strand, within IAI46_15745at 3308.042 kb on + strand, within IAI46_15745at 3308.058 kb on - strand, within IAI46_15745at 3308.058 kb on - strand, within IAI46_15745at 3308.148 kb on - strand, within IAI46_15745at 3308.168 kb on + strand, within IAI46_15745at 3308.254 kb on + strand, within IAI46_15745at 3308.279 kb on + strand, within IAI46_15745at 3308.347 kb on + strand, within IAI46_15745at 3308.685 kb on - strand, within IAI46_15745at 3308.685 kb on - strand, within IAI46_15745at 3308.685 kb on - strand, within IAI46_15745at 3308.915 kb on + strand, within IAI46_15745at 3308.915 kb on + strand, within IAI46_15745at 3308.915 kb on + strand, within IAI46_15745at 3308.983 kb on + strand, within IAI46_15745at 3308.984 kb on - strand, within IAI46_15745at 3308.984 kb on - strand, within IAI46_15745at 3309.424 kb on + strand, within IAI46_15745at 3309.574 kb on + strand, within IAI46_15745at 3309.608 kb on + strand, within IAI46_15745at 3309.608 kb on + strand, within IAI46_15745at 3309.609 kb on - strand, within IAI46_15745at 3309.665 kb on - strand, within IAI46_15745at 3309.879 kb on - strand, within IAI46_15745at 3309.879 kb on - strand, within IAI46_15745at 3309.974 kb on + strand, within IAI46_15745at 3310.182 kb on + strand, within IAI46_15745at 3310.183 kb on - strand, within IAI46_15745at 3310.220 kb on + strand, within IAI46_15745at 3310.220 kb on + strand, within IAI46_15745at 3310.221 kb on - strand, within IAI46_15745at 3310.221 kb on - strand, within IAI46_15745at 3310.221 kb on - strand, within IAI46_15745at 3310.221 kb on - strand, within IAI46_15745at 3310.439 kb on + strandat 3310.727 kb on + strandat 3310.727 kb on + strandat 3310.825 kb on + strand, within IAI46_15750at 3310.825 kb on + strand, within IAI46_15750at 3310.826 kb on - strand, within IAI46_15750at 3310.977 kb on + strandat 3311.258 kb on - strand, within IAI46_15755at 3311.260 kb on + strand, within IAI46_15755at 3311.260 kb on + strand, within IAI46_15755at 3311.260 kb on + strand, within IAI46_15755at 3311.260 kb on + strand, within IAI46_15755at 3311.261 kb on - strand, within IAI46_15755at 3311.269 kb on + strand, within IAI46_15755at 3311.269 kb on + strand, within IAI46_15755at 3311.293 kb on + strand, within IAI46_15755at 3311.302 kb on + strand, within IAI46_15755at 3311.302 kb on + strand, within IAI46_15755at 3311.303 kb on - strand, within IAI46_15755at 3311.303 kb on - strand, within IAI46_15755at 3311.331 kb on + strand, within IAI46_15755at 3311.332 kb on - strand, within IAI46_15755at 3311.402 kb on + strandat 3311.455 kb on + strandat 3311.456 kb on - strandat 3311.489 kb on + strandat 3311.490 kb on - strandat 3311.544 kb on - strand, within IAI46_15760

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,305,684 + IAI46_15740 0.72 -0.2
3,305,684 + IAI46_15740 0.72 -0.3
3,305,684 + IAI46_15740 0.72 +0.7
3,305,685 - IAI46_15740 0.72 +1.3
3,305,685 - IAI46_15740 0.72 +0.3
3,305,685 - IAI46_15740 0.72 +0.4
3,305,688 + IAI46_15740 0.72 +0.2
3,305,688 + IAI46_15740 0.72 +0.5
3,305,863 + IAI46_15740 0.84 -0.6
3,306,000 - +0.3
3,306,000 - -0.1
3,306,027 - +1.3
3,306,035 - +0.0
3,306,060 + -0.0
3,306,063 - +0.6
3,306,124 + +1.2
3,306,125 - -0.0
3,306,136 + +0.5
3,306,137 - -0.1
3,306,148 + +1.2
3,306,149 - -0.0
3,306,149 - +0.2
3,306,206 - +0.2
3,306,243 - +0.2
3,306,584 + -0.1
3,306,615 + +0.4
3,306,638 + -0.4
3,306,639 - +0.2
3,306,776 + -0.3
3,306,860 - -0.1
3,306,860 - +0.8
3,307,008 + -0.9
3,307,046 + +0.1
3,307,100 - IAI46_15745 0.11 -1.3
3,307,330 + IAI46_15745 0.17 -0.0
3,307,512 - IAI46_15745 0.21 +0.1
3,307,622 + IAI46_15745 0.24 +0.2
3,307,622 + IAI46_15745 0.24 +1.1
3,307,623 - IAI46_15745 0.24 -1.0
3,307,623 - IAI46_15745 0.24 +0.4
3,307,695 + IAI46_15745 0.26 +0.1
3,308,042 + IAI46_15745 0.35 -1.4
3,308,058 - IAI46_15745 0.35 -0.2
3,308,058 - IAI46_15745 0.35 +0.7
3,308,148 - IAI46_15745 0.37 -0.1
3,308,168 + IAI46_15745 0.38 -1.1
3,308,254 + IAI46_15745 0.40 +0.4
3,308,279 + IAI46_15745 0.41 +0.7
3,308,347 + IAI46_15745 0.42 +0.4
3,308,685 - IAI46_15745 0.51 -0.6
3,308,685 - IAI46_15745 0.51 +1.0
3,308,685 - IAI46_15745 0.51 +0.7
3,308,915 + IAI46_15745 0.57 +0.9
3,308,915 + IAI46_15745 0.57 -0.8
3,308,915 + IAI46_15745 0.57 +0.2
3,308,983 + IAI46_15745 0.59 +0.3
3,308,984 - IAI46_15745 0.59 -0.3
3,308,984 - IAI46_15745 0.59 +0.2
3,309,424 + IAI46_15745 0.70 +0.7
3,309,574 + IAI46_15745 0.73 -0.3
3,309,608 + IAI46_15745 0.74 -0.3
3,309,608 + IAI46_15745 0.74 -0.0
3,309,609 - IAI46_15745 0.74 +0.2
3,309,665 - IAI46_15745 0.76 +0.5
3,309,879 - IAI46_15745 0.81 -0.8
3,309,879 - IAI46_15745 0.81 -0.2
3,309,974 + IAI46_15745 0.83 +0.2
3,310,182 + IAI46_15745 0.89 +0.4
3,310,183 - IAI46_15745 0.89 -0.6
3,310,220 + IAI46_15745 0.90 +0.0
3,310,220 + IAI46_15745 0.90 +0.2
3,310,221 - IAI46_15745 0.90 +1.3
3,310,221 - IAI46_15745 0.90 +0.9
3,310,221 - IAI46_15745 0.90 -0.6
3,310,221 - IAI46_15745 0.90 -0.6
3,310,439 + -0.3
3,310,727 + -0.6
3,310,727 + -0.2
3,310,825 + IAI46_15750 0.15 -0.0
3,310,825 + IAI46_15750 0.15 +0.2
3,310,826 - IAI46_15750 0.16 -0.4
3,310,977 + -1.6
3,311,258 - IAI46_15755 0.60 +0.3
3,311,260 + IAI46_15755 0.61 -0.4
3,311,260 + IAI46_15755 0.61 -0.0
3,311,260 + IAI46_15755 0.61 +0.7
3,311,260 + IAI46_15755 0.61 -0.3
3,311,261 - IAI46_15755 0.61 -0.3
3,311,269 + IAI46_15755 0.63 +1.1
3,311,269 + IAI46_15755 0.63 +0.4
3,311,293 + IAI46_15755 0.69 +0.2
3,311,302 + IAI46_15755 0.71 -0.2
3,311,302 + IAI46_15755 0.71 -0.7
3,311,303 - IAI46_15755 0.71 +0.2
3,311,303 - IAI46_15755 0.71 +0.6
3,311,331 + IAI46_15755 0.78 -0.3
3,311,332 - IAI46_15755 0.78 -0.2
3,311,402 + -0.1
3,311,455 + -0.6
3,311,456 - +0.6
3,311,489 + -1.4
3,311,490 - -0.4
3,311,544 - IAI46_15760 0.12 -0.6

Or see this region's nucleotide sequence