Strain Fitness in Serratia liquefaciens MT49 around IAI46_15725

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15720 and IAI46_15725 are separated by 201 nucleotidesIAI46_15725 and IAI46_15730 are separated by 11 nucleotides IAI46_15720: IAI46_15720 - TonB-dependent receptor, at 3,298,713 to 3,300,857 _15720 IAI46_15725: IAI46_15725 - deferrochelatase/peroxidase EfeB, at 3,301,059 to 3,302,357 _15725 IAI46_15730: IAI46_15730 - iron uptake system protein EfeO, at 3,302,369 to 3,303,505 _15730 Position (kb) 3301 3302 3303Strain fitness (log2 ratio) -2 -1 0 1 2at 3300.062 kb on + strand, within IAI46_15720at 3300.242 kb on + strand, within IAI46_15720at 3300.243 kb on - strand, within IAI46_15720at 3300.247 kb on + strand, within IAI46_15720at 3300.247 kb on + strand, within IAI46_15720at 3300.248 kb on - strand, within IAI46_15720at 3300.331 kb on + strand, within IAI46_15720at 3300.331 kb on + strand, within IAI46_15720at 3300.410 kb on - strand, within IAI46_15720at 3300.509 kb on + strand, within IAI46_15720at 3300.510 kb on - strand, within IAI46_15720at 3300.521 kb on - strand, within IAI46_15720at 3300.525 kb on - strand, within IAI46_15720at 3300.528 kb on + strand, within IAI46_15720at 3300.529 kb on - strand, within IAI46_15720at 3300.529 kb on - strand, within IAI46_15720at 3300.544 kb on + strand, within IAI46_15720at 3300.545 kb on - strand, within IAI46_15720at 3300.545 kb on - strand, within IAI46_15720at 3300.801 kb on + strandat 3300.872 kb on + strandat 3300.916 kb on + strandat 3300.917 kb on - strandat 3300.946 kb on + strandat 3301.087 kb on + strandat 3301.088 kb on - strandat 3301.219 kb on + strand, within IAI46_15725at 3301.277 kb on - strand, within IAI46_15725at 3301.277 kb on - strand, within IAI46_15725at 3301.280 kb on + strand, within IAI46_15725at 3301.280 kb on + strand, within IAI46_15725at 3301.280 kb on + strand, within IAI46_15725at 3301.280 kb on + strand, within IAI46_15725at 3301.281 kb on - strand, within IAI46_15725at 3301.304 kb on + strand, within IAI46_15725at 3301.308 kb on - strand, within IAI46_15725at 3301.387 kb on + strand, within IAI46_15725at 3301.508 kb on + strand, within IAI46_15725at 3301.525 kb on + strand, within IAI46_15725at 3301.525 kb on + strand, within IAI46_15725at 3301.530 kb on - strand, within IAI46_15725at 3301.670 kb on + strand, within IAI46_15725at 3301.670 kb on + strand, within IAI46_15725at 3301.671 kb on - strand, within IAI46_15725at 3301.692 kb on - strand, within IAI46_15725at 3302.158 kb on + strand, within IAI46_15725at 3302.470 kb on - strandat 3302.478 kb on + strandat 3302.478 kb on + strandat 3302.496 kb on + strand, within IAI46_15730at 3302.512 kb on + strand, within IAI46_15730at 3302.722 kb on + strand, within IAI46_15730at 3302.722 kb on + strand, within IAI46_15730at 3302.778 kb on + strand, within IAI46_15730at 3302.959 kb on - strand, within IAI46_15730at 3302.959 kb on - strand, within IAI46_15730at 3303.072 kb on + strand, within IAI46_15730at 3303.072 kb on + strand, within IAI46_15730at 3303.073 kb on - strand, within IAI46_15730at 3303.073 kb on - strand, within IAI46_15730at 3303.073 kb on - strand, within IAI46_15730at 3303.081 kb on + strand, within IAI46_15730at 3303.202 kb on - strand, within IAI46_15730at 3303.254 kb on - strand, within IAI46_15730at 3303.254 kb on - strand, within IAI46_15730

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,300,062 + IAI46_15720 0.63 +0.6
3,300,242 + IAI46_15720 0.71 -0.3
3,300,243 - IAI46_15720 0.71 +1.4
3,300,247 + IAI46_15720 0.72 -0.3
3,300,247 + IAI46_15720 0.72 +0.3
3,300,248 - IAI46_15720 0.72 +0.1
3,300,331 + IAI46_15720 0.75 +0.5
3,300,331 + IAI46_15720 0.75 -0.3
3,300,410 - IAI46_15720 0.79 +0.1
3,300,509 + IAI46_15720 0.84 +0.6
3,300,510 - IAI46_15720 0.84 +0.4
3,300,521 - IAI46_15720 0.84 -1.4
3,300,525 - IAI46_15720 0.84 -0.7
3,300,528 + IAI46_15720 0.85 -0.9
3,300,529 - IAI46_15720 0.85 +0.3
3,300,529 - IAI46_15720 0.85 +1.1
3,300,544 + IAI46_15720 0.85 +0.3
3,300,545 - IAI46_15720 0.85 +0.8
3,300,545 - IAI46_15720 0.85 +0.3
3,300,801 + +0.7
3,300,872 + -0.6
3,300,916 + -0.2
3,300,917 - -0.2
3,300,946 + +0.4
3,301,087 + +0.7
3,301,088 - +0.2
3,301,219 + IAI46_15725 0.12 +1.8
3,301,277 - IAI46_15725 0.17 +0.3
3,301,277 - IAI46_15725 0.17 -0.4
3,301,280 + IAI46_15725 0.17 -0.4
3,301,280 + IAI46_15725 0.17 +0.3
3,301,280 + IAI46_15725 0.17 +1.0
3,301,280 + IAI46_15725 0.17 -0.1
3,301,281 - IAI46_15725 0.17 -0.3
3,301,304 + IAI46_15725 0.19 -0.3
3,301,308 - IAI46_15725 0.19 -1.3
3,301,387 + IAI46_15725 0.25 +0.4
3,301,508 + IAI46_15725 0.35 +0.5
3,301,525 + IAI46_15725 0.36 -0.0
3,301,525 + IAI46_15725 0.36 -0.5
3,301,530 - IAI46_15725 0.36 -0.0
3,301,670 + IAI46_15725 0.47 -2.0
3,301,670 + IAI46_15725 0.47 +0.4
3,301,671 - IAI46_15725 0.47 +1.9
3,301,692 - IAI46_15725 0.49 -0.6
3,302,158 + IAI46_15725 0.85 +0.3
3,302,470 - -0.2
3,302,478 + +0.0
3,302,478 + -0.6
3,302,496 + IAI46_15730 0.11 -0.3
3,302,512 + IAI46_15730 0.13 +0.2
3,302,722 + IAI46_15730 0.31 -0.3
3,302,722 + IAI46_15730 0.31 -0.2
3,302,778 + IAI46_15730 0.36 -0.2
3,302,959 - IAI46_15730 0.52 -0.3
3,302,959 - IAI46_15730 0.52 -0.2
3,303,072 + IAI46_15730 0.62 -0.2
3,303,072 + IAI46_15730 0.62 +0.2
3,303,073 - IAI46_15730 0.62 -0.3
3,303,073 - IAI46_15730 0.62 +0.6
3,303,073 - IAI46_15730 0.62 -0.3
3,303,081 + IAI46_15730 0.63 +0.6
3,303,202 - IAI46_15730 0.73 -1.9
3,303,254 - IAI46_15730 0.78 -0.6
3,303,254 - IAI46_15730 0.78 -0.6

Or see this region's nucleotide sequence