Strain Fitness in Serratia liquefaciens MT49 around IAI46_15475

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15470 and IAI46_15475 are separated by 441 nucleotidesIAI46_15475 and IAI46_15480 are separated by 429 nucleotides IAI46_15470: IAI46_15470 - ketoacyl-ACP synthase III, at 3,237,776 to 3,238,783 _15470 IAI46_15475: IAI46_15475 - tyrosine-type recombinase/integrase, at 3,239,225 to 3,239,836 _15475 IAI46_15480: IAI46_15480 - fimbrial protein, at 3,240,266 to 3,240,811 _15480 Position (kb) 3239 3240Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3238.351 kb on + strand, within IAI46_15470at 3238.402 kb on - strand, within IAI46_15470at 3238.430 kb on - strand, within IAI46_15470at 3238.469 kb on - strand, within IAI46_15470at 3238.474 kb on + strand, within IAI46_15470at 3238.755 kb on - strandat 3238.772 kb on - strandat 3238.772 kb on - strandat 3238.776 kb on - strandat 3238.887 kb on + strandat 3238.887 kb on + strandat 3238.888 kb on - strandat 3238.888 kb on - strandat 3238.889 kb on + strandat 3238.915 kb on - strandat 3238.978 kb on - strandat 3239.000 kb on + strandat 3239.028 kb on + strandat 3239.078 kb on + strandat 3239.144 kb on + strandat 3239.145 kb on - strandat 3239.145 kb on - strandat 3239.145 kb on - strandat 3239.145 kb on - strandat 3239.372 kb on - strand, within IAI46_15475at 3239.374 kb on + strand, within IAI46_15475at 3239.417 kb on + strand, within IAI46_15475at 3239.585 kb on + strand, within IAI46_15475at 3239.644 kb on + strand, within IAI46_15475at 3239.644 kb on + strand, within IAI46_15475at 3239.645 kb on - strand, within IAI46_15475at 3239.712 kb on - strand, within IAI46_15475at 3239.737 kb on + strand, within IAI46_15475at 3239.737 kb on + strand, within IAI46_15475at 3239.747 kb on + strand, within IAI46_15475at 3239.748 kb on - strand, within IAI46_15475at 3239.859 kb on + strandat 3239.859 kb on + strandat 3239.860 kb on - strandat 3239.860 kb on - strandat 3239.860 kb on - strandat 3239.860 kb on - strandat 3239.860 kb on - strandat 3239.984 kb on - strandat 3239.988 kb on - strandat 3240.137 kb on - strandat 3240.259 kb on + strandat 3240.259 kb on + strandat 3240.344 kb on - strand, within IAI46_15480at 3240.665 kb on + strand, within IAI46_15480at 3240.665 kb on + strand, within IAI46_15480at 3240.666 kb on - strand, within IAI46_15480at 3240.666 kb on - strand, within IAI46_15480at 3240.737 kb on + strand, within IAI46_15480at 3240.803 kb on + strandat 3240.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,238,351 + IAI46_15470 0.57 -0.7
3,238,402 - IAI46_15470 0.62 +0.2
3,238,430 - IAI46_15470 0.65 +0.7
3,238,469 - IAI46_15470 0.69 +0.5
3,238,474 + IAI46_15470 0.69 +1.0
3,238,755 - -1.1
3,238,772 - -0.0
3,238,772 - +0.1
3,238,776 - -0.3
3,238,887 + +0.2
3,238,887 + -0.6
3,238,888 - +1.1
3,238,888 - -0.5
3,238,889 + -0.9
3,238,915 - -0.1
3,238,978 - +0.5
3,239,000 + +0.9
3,239,028 + -0.2
3,239,078 + -0.0
3,239,144 + +0.1
3,239,145 - -0.5
3,239,145 - -0.6
3,239,145 - -0.5
3,239,145 - +0.2
3,239,372 - IAI46_15475 0.24 +0.8
3,239,374 + IAI46_15475 0.24 +0.2
3,239,417 + IAI46_15475 0.31 -0.7
3,239,585 + IAI46_15475 0.59 -0.1
3,239,644 + IAI46_15475 0.68 -0.4
3,239,644 + IAI46_15475 0.68 -0.0
3,239,645 - IAI46_15475 0.69 -0.1
3,239,712 - IAI46_15475 0.80 -0.0
3,239,737 + IAI46_15475 0.84 +0.7
3,239,737 + IAI46_15475 0.84 +0.7
3,239,747 + IAI46_15475 0.85 +0.5
3,239,748 - IAI46_15475 0.85 +0.9
3,239,859 + -0.6
3,239,859 + +0.1
3,239,860 - -0.3
3,239,860 - +1.4
3,239,860 - +0.1
3,239,860 - +0.1
3,239,860 - +0.2
3,239,984 - -0.3
3,239,988 - +0.9
3,240,137 - +0.0
3,240,259 + +0.4
3,240,259 + +1.4
3,240,344 - IAI46_15480 0.14 +0.3
3,240,665 + IAI46_15480 0.73 +0.6
3,240,665 + IAI46_15480 0.73 +1.8
3,240,666 - IAI46_15480 0.73 -2.8
3,240,666 - IAI46_15480 0.73 -0.4
3,240,737 + IAI46_15480 0.86 -1.8
3,240,803 + +0.2
3,240,804 - -0.4

Or see this region's nucleotide sequence