Strain Fitness in Serratia liquefaciens MT49 around IAI46_15310

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15305 and IAI46_15310 are separated by 229 nucleotidesIAI46_15310 and IAI46_15315 are separated by 653 nucleotides IAI46_15305: IAI46_15305 - integrase arm-type DNA-binding domain-containing protein, at 3,201,090 to 3,202,313 _15305 IAI46_15310: IAI46_15310 - porin OmpC, at 3,202,543 to 3,203,622 _15310 IAI46_15315: IAI46_15315 - succinylglutamate desuccinylase, at 3,204,276 to 3,205,259 _15315 Position (kb) 3202 3203 3204Strain fitness (log2 ratio) -2 -1 0 1 2at 3201.613 kb on + strand, within IAI46_15305at 3201.624 kb on + strand, within IAI46_15305at 3201.669 kb on + strand, within IAI46_15305at 3201.670 kb on - strand, within IAI46_15305at 3201.686 kb on + strand, within IAI46_15305at 3201.686 kb on + strand, within IAI46_15305at 3201.686 kb on + strand, within IAI46_15305at 3201.687 kb on - strand, within IAI46_15305at 3201.780 kb on + strand, within IAI46_15305at 3201.805 kb on + strand, within IAI46_15305at 3202.048 kb on - strand, within IAI46_15305at 3202.141 kb on + strand, within IAI46_15305at 3202.182 kb on - strand, within IAI46_15305at 3202.182 kb on - strand, within IAI46_15305at 3202.182 kb on - strand, within IAI46_15305at 3202.183 kb on + strand, within IAI46_15305at 3202.187 kb on + strand, within IAI46_15305at 3202.187 kb on + strand, within IAI46_15305at 3202.187 kb on + strand, within IAI46_15305at 3202.188 kb on - strand, within IAI46_15305at 3202.188 kb on - strand, within IAI46_15305at 3202.188 kb on - strand, within IAI46_15305at 3202.189 kb on + strand, within IAI46_15305at 3202.189 kb on + strand, within IAI46_15305at 3202.274 kb on + strandat 3202.326 kb on - strandat 3202.326 kb on - strandat 3202.326 kb on - strandat 3202.352 kb on + strandat 3202.353 kb on - strandat 3202.353 kb on - strandat 3202.355 kb on - strandat 3202.393 kb on + strandat 3202.393 kb on + strandat 3202.394 kb on - strandat 3202.394 kb on - strandat 3202.395 kb on + strandat 3202.396 kb on - strandat 3202.424 kb on + strandat 3202.449 kb on + strandat 3202.450 kb on - strandat 3202.492 kb on + strandat 3202.492 kb on + strandat 3202.493 kb on - strandat 3202.529 kb on - strandat 3202.545 kb on - strandat 3202.638 kb on - strandat 3202.643 kb on + strandat 3202.662 kb on - strand, within IAI46_15310at 3202.664 kb on + strand, within IAI46_15310at 3202.664 kb on + strand, within IAI46_15310at 3202.664 kb on + strand, within IAI46_15310at 3202.686 kb on - strand, within IAI46_15310at 3202.722 kb on - strand, within IAI46_15310at 3203.159 kb on + strand, within IAI46_15310at 3203.205 kb on - strand, within IAI46_15310at 3203.205 kb on - strand, within IAI46_15310at 3203.210 kb on + strand, within IAI46_15310at 3203.210 kb on + strand, within IAI46_15310at 3203.211 kb on - strand, within IAI46_15310at 3203.246 kb on + strand, within IAI46_15310at 3203.246 kb on + strand, within IAI46_15310at 3203.246 kb on + strand, within IAI46_15310at 3203.274 kb on - strand, within IAI46_15310at 3203.456 kb on + strand, within IAI46_15310at 3203.609 kb on - strandat 3204.135 kb on - strandat 3204.192 kb on + strandat 3204.194 kb on + strandat 3204.236 kb on + strandat 3204.237 kb on - strandat 3204.241 kb on - strandat 3204.246 kb on - strandat 3204.246 kb on - strandat 3204.277 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,201,613 + IAI46_15305 0.43 -1.5
3,201,624 + IAI46_15305 0.44 +1.3
3,201,669 + IAI46_15305 0.47 -0.5
3,201,670 - IAI46_15305 0.47 +0.0
3,201,686 + IAI46_15305 0.49 -0.6
3,201,686 + IAI46_15305 0.49 +0.2
3,201,686 + IAI46_15305 0.49 +1.3
3,201,687 - IAI46_15305 0.49 +0.2
3,201,780 + IAI46_15305 0.56 +0.3
3,201,805 + IAI46_15305 0.58 +0.6
3,202,048 - IAI46_15305 0.78 +1.0
3,202,141 + IAI46_15305 0.86 +0.4
3,202,182 - IAI46_15305 0.89 +0.1
3,202,182 - IAI46_15305 0.89 +0.2
3,202,182 - IAI46_15305 0.89 +0.2
3,202,183 + IAI46_15305 0.89 +0.1
3,202,187 + IAI46_15305 0.90 -0.8
3,202,187 + IAI46_15305 0.90 -0.2
3,202,187 + IAI46_15305 0.90 +0.2
3,202,188 - IAI46_15305 0.90 +0.3
3,202,188 - IAI46_15305 0.90 +0.7
3,202,188 - IAI46_15305 0.90 -0.1
3,202,189 + IAI46_15305 0.90 +1.0
3,202,189 + IAI46_15305 0.90 +0.4
3,202,274 + -0.6
3,202,326 - +0.5
3,202,326 - +1.2
3,202,326 - +0.7
3,202,352 + +1.1
3,202,353 - +1.0
3,202,353 - +1.7
3,202,355 - +0.1
3,202,393 + +0.2
3,202,393 + +0.4
3,202,394 - +1.9
3,202,394 - -2.7
3,202,395 + +0.8
3,202,396 - -0.8
3,202,424 + +1.4
3,202,449 + +0.6
3,202,450 - +0.1
3,202,492 + -0.7
3,202,492 + -0.5
3,202,493 - -0.4
3,202,529 - +0.3
3,202,545 - +0.1
3,202,638 - -0.4
3,202,643 + +0.4
3,202,662 - IAI46_15310 0.11 -1.2
3,202,664 + IAI46_15310 0.11 -0.4
3,202,664 + IAI46_15310 0.11 +0.0
3,202,664 + IAI46_15310 0.11 +0.5
3,202,686 - IAI46_15310 0.13 -1.1
3,202,722 - IAI46_15310 0.17 +0.1
3,203,159 + IAI46_15310 0.57 +1.4
3,203,205 - IAI46_15310 0.61 -0.1
3,203,205 - IAI46_15310 0.61 +0.6
3,203,210 + IAI46_15310 0.62 -1.5
3,203,210 + IAI46_15310 0.62 +0.2
3,203,211 - IAI46_15310 0.62 +0.5
3,203,246 + IAI46_15310 0.65 +1.2
3,203,246 + IAI46_15310 0.65 +1.0
3,203,246 + IAI46_15310 0.65 +0.9
3,203,274 - IAI46_15310 0.68 +0.2
3,203,456 + IAI46_15310 0.85 -0.6
3,203,609 - +1.2
3,204,135 - -0.1
3,204,192 + +1.0
3,204,194 + -0.6
3,204,236 + +0.2
3,204,237 - +0.0
3,204,241 - +0.7
3,204,246 - +0.1
3,204,246 - -0.5
3,204,277 + +1.1

Or see this region's nucleotide sequence