Strain Fitness in Serratia liquefaciens MT49 around IAI46_15195

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15185 and IAI46_15190 are separated by 34 nucleotidesIAI46_15190 and IAI46_15195 are separated by 114 nucleotidesIAI46_15195 and IAI46_15200 are separated by 117 nucleotides IAI46_15185: IAI46_15185 - DNA-binding protein, at 3,188,697 to 3,189,530 _15185 IAI46_15190: IAI46_15190 - hypothetical protein, at 3,189,565 to 3,189,843 _15190 IAI46_15195: IAI46_15195 - helix-turn-helix domain-containing protein, at 3,189,958 to 3,190,185 _15195 IAI46_15200: IAI46_15200 - helix-turn-helix transcriptional regulator, at 3,190,303 to 3,191,037 _15200 Position (kb) 3189 3190 3191Strain fitness (log2 ratio) -1 0 1at 3189.048 kb on + strand, within IAI46_15185at 3189.140 kb on - strand, within IAI46_15185at 3189.182 kb on + strand, within IAI46_15185at 3189.182 kb on + strand, within IAI46_15185at 3189.182 kb on + strand, within IAI46_15185at 3189.437 kb on - strand, within IAI46_15185at 3189.460 kb on + strandat 3189.460 kb on + strandat 3189.460 kb on + strandat 3189.461 kb on - strandat 3189.476 kb on + strandat 3189.479 kb on + strandat 3189.480 kb on - strandat 3189.480 kb on - strandat 3189.535 kb on - strandat 3189.566 kb on + strandat 3189.610 kb on + strand, within IAI46_15190at 3189.611 kb on - strand, within IAI46_15190at 3189.611 kb on - strand, within IAI46_15190at 3189.615 kb on - strand, within IAI46_15190at 3189.870 kb on + strandat 3189.874 kb on + strandat 3189.981 kb on + strand, within IAI46_15195at 3189.994 kb on + strand, within IAI46_15195at 3189.994 kb on + strand, within IAI46_15195at 3190.070 kb on - strand, within IAI46_15195at 3190.081 kb on - strand, within IAI46_15195

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,189,048 + IAI46_15185 0.42 -0.2
3,189,140 - IAI46_15185 0.53 -0.7
3,189,182 + IAI46_15185 0.58 +0.1
3,189,182 + IAI46_15185 0.58 +0.5
3,189,182 + IAI46_15185 0.58 +0.2
3,189,437 - IAI46_15185 0.89 +0.8
3,189,460 + +1.4
3,189,460 + +1.2
3,189,460 + +1.0
3,189,461 - +0.7
3,189,476 + +0.0
3,189,479 + +0.6
3,189,480 - -1.5
3,189,480 - +0.4
3,189,535 - +0.0
3,189,566 + +0.1
3,189,610 + IAI46_15190 0.16 +0.4
3,189,611 - IAI46_15190 0.16 +0.7
3,189,611 - IAI46_15190 0.16 +1.0
3,189,615 - IAI46_15190 0.18 +0.4
3,189,870 + +1.7
3,189,874 + +0.7
3,189,981 + IAI46_15195 0.10 -0.8
3,189,994 + IAI46_15195 0.16 +0.2
3,189,994 + IAI46_15195 0.16 +0.4
3,190,070 - IAI46_15195 0.49 -1.2
3,190,081 - IAI46_15195 0.54 -0.3

Or see this region's nucleotide sequence