Strain Fitness in Serratia liquefaciens MT49 around IAI46_14825

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14815 and IAI46_14820 are separated by 15 nucleotidesIAI46_14820 and IAI46_14825 are separated by 54 nucleotidesIAI46_14825 and IAI46_14830 are separated by 416 nucleotides IAI46_14815: IAI46_14815 - PTS mannose/fructose/sorbose transporter subunit IIC, at 3,139,162 to 3,139,962 _14815 IAI46_14820: IAI46_14820 - PTS mannose transporter subunit IID, at 3,139,978 to 3,140,820 _14820 IAI46_14825: IAI46_14825 - DUF986 domain-containing protein, at 3,140,875 to 3,141,333 _14825 IAI46_14830: IAI46_14830 - manganese efflux pump MntP, at 3,141,750 to 3,142,319 _14830 Position (kb) 3140 3141 3142Strain fitness (log2 ratio) -1 0 1 2at 3139.966 kb on + strandat 3139.966 kb on + strandat 3140.456 kb on - strand, within IAI46_14820at 3140.602 kb on - strand, within IAI46_14820at 3140.643 kb on + strand, within IAI46_14820at 3140.644 kb on - strand, within IAI46_14820at 3140.721 kb on + strand, within IAI46_14820at 3140.894 kb on + strandat 3140.894 kb on + strandat 3140.895 kb on - strandat 3140.897 kb on + strandat 3141.001 kb on - strand, within IAI46_14825at 3141.054 kb on + strand, within IAI46_14825at 3141.055 kb on - strand, within IAI46_14825at 3141.080 kb on + strand, within IAI46_14825at 3141.089 kb on - strand, within IAI46_14825at 3141.089 kb on - strand, within IAI46_14825at 3141.104 kb on + strand, within IAI46_14825at 3141.122 kb on - strand, within IAI46_14825at 3141.125 kb on + strand, within IAI46_14825at 3141.131 kb on - strand, within IAI46_14825at 3141.207 kb on + strand, within IAI46_14825at 3141.390 kb on - strandat 3141.455 kb on - strandat 3141.519 kb on + strandat 3141.544 kb on + strandat 3141.549 kb on + strandat 3141.549 kb on + strandat 3141.549 kb on + strandat 3141.684 kb on + strandat 3141.684 kb on + strandat 3141.718 kb on + strandat 3141.718 kb on + strandat 3141.742 kb on + strandat 3141.743 kb on - strandat 3141.747 kb on + strandat 3141.764 kb on + strandat 3141.896 kb on + strand, within IAI46_14830at 3141.939 kb on + strand, within IAI46_14830at 3141.939 kb on + strand, within IAI46_14830at 3141.940 kb on - strand, within IAI46_14830at 3141.984 kb on - strand, within IAI46_14830at 3142.184 kb on + strand, within IAI46_14830at 3142.184 kb on + strand, within IAI46_14830at 3142.185 kb on - strand, within IAI46_14830

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,139,966 + +0.5
3,139,966 + +0.8
3,140,456 - IAI46_14820 0.57 +0.3
3,140,602 - IAI46_14820 0.74 -1.4
3,140,643 + IAI46_14820 0.79 +0.9
3,140,644 - IAI46_14820 0.79 +0.7
3,140,721 + IAI46_14820 0.88 -1.0
3,140,894 + +0.2
3,140,894 + -0.3
3,140,895 - -0.9
3,140,897 + +0.1
3,141,001 - IAI46_14825 0.27 +0.4
3,141,054 + IAI46_14825 0.39 +0.4
3,141,055 - IAI46_14825 0.39 -0.0
3,141,080 + IAI46_14825 0.45 +1.4
3,141,089 - IAI46_14825 0.47 +0.7
3,141,089 - IAI46_14825 0.47 +0.5
3,141,104 + IAI46_14825 0.50 -0.2
3,141,122 - IAI46_14825 0.54 -0.1
3,141,125 + IAI46_14825 0.54 +0.6
3,141,131 - IAI46_14825 0.56 +0.1
3,141,207 + IAI46_14825 0.72 +0.7
3,141,390 - -1.3
3,141,455 - +2.0
3,141,519 + +0.3
3,141,544 + -0.9
3,141,549 + -0.1
3,141,549 + +0.4
3,141,549 + +0.6
3,141,684 + -0.2
3,141,684 + -0.2
3,141,718 + +0.6
3,141,718 + -0.2
3,141,742 + -0.4
3,141,743 - +1.4
3,141,747 + +0.1
3,141,764 + +0.2
3,141,896 + IAI46_14830 0.26 -1.1
3,141,939 + IAI46_14830 0.33 -0.6
3,141,939 + IAI46_14830 0.33 -0.4
3,141,940 - IAI46_14830 0.33 +0.4
3,141,984 - IAI46_14830 0.41 -0.9
3,142,184 + IAI46_14830 0.76 -0.7
3,142,184 + IAI46_14830 0.76 +0.8
3,142,185 - IAI46_14830 0.76 +0.6

Or see this region's nucleotide sequence