Strain Fitness in Serratia liquefaciens MT49 around IAI46_14495

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14490 and IAI46_14495 are separated by 409 nucleotidesIAI46_14495 and IAI46_14500 are separated by 68 nucleotidesIAI46_14500 and IAI46_14505 are separated by 83 nucleotides IAI46_14490: IAI46_14490 - YcgN family cysteine cluster protein, at 3,074,337 to 3,074,783 _14490 IAI46_14495: IAI46_14495 - CsbD family protein, at 3,075,193 to 3,075,441 _14495 IAI46_14500: IAI46_14500 - fumarylacetoacetate hydrolase family protein, at 3,075,510 to 3,076,166 _14500 IAI46_14505: IAI46_14505 - lytic murein transglycosylase, at 3,076,250 to 3,077,314 _14505 Position (kb) 3075 3076Strain fitness (log2 ratio) -2 -1 0 1 2at 3074.255 kb on - strandat 3074.260 kb on - strandat 3074.408 kb on + strand, within IAI46_14490at 3074.408 kb on + strand, within IAI46_14490at 3074.409 kb on - strand, within IAI46_14490at 3074.618 kb on + strand, within IAI46_14490at 3074.621 kb on + strand, within IAI46_14490at 3074.654 kb on - strand, within IAI46_14490at 3074.798 kb on + strandat 3074.799 kb on - strandat 3074.802 kb on + strandat 3074.843 kb on + strandat 3074.844 kb on - strandat 3074.847 kb on + strandat 3074.848 kb on - strandat 3074.848 kb on - strandat 3074.848 kb on - strandat 3074.848 kb on - strandat 3074.989 kb on - strandat 3075.029 kb on + strandat 3075.192 kb on + strandat 3075.193 kb on - strandat 3075.193 kb on - strandat 3075.304 kb on + strand, within IAI46_14495at 3075.304 kb on + strand, within IAI46_14495at 3075.304 kb on + strand, within IAI46_14495at 3075.386 kb on + strand, within IAI46_14495at 3075.644 kb on + strand, within IAI46_14500at 3075.644 kb on + strand, within IAI46_14500at 3075.646 kb on + strand, within IAI46_14500at 3075.646 kb on + strand, within IAI46_14500at 3075.647 kb on - strand, within IAI46_14500at 3075.647 kb on - strand, within IAI46_14500at 3075.766 kb on - strand, within IAI46_14500at 3075.932 kb on + strand, within IAI46_14500at 3076.090 kb on + strand, within IAI46_14500at 3076.116 kb on - strandat 3076.135 kb on - strandat 3076.135 kb on - strandat 3076.154 kb on + strandat 3076.155 kb on - strandat 3076.162 kb on + strandat 3076.162 kb on + strandat 3076.163 kb on - strandat 3076.163 kb on - strandat 3076.167 kb on - strandat 3076.179 kb on + strandat 3076.189 kb on + strandat 3076.190 kb on - strandat 3076.206 kb on - strandat 3076.206 kb on - strandat 3076.206 kb on - strandat 3076.251 kb on + strandat 3076.277 kb on - strandat 3076.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,074,255 - +2.2
3,074,260 - +1.4
3,074,408 + IAI46_14490 0.16 +0.3
3,074,408 + IAI46_14490 0.16 +0.2
3,074,409 - IAI46_14490 0.16 -0.2
3,074,618 + IAI46_14490 0.63 +1.6
3,074,621 + IAI46_14490 0.64 -0.7
3,074,654 - IAI46_14490 0.71 -0.3
3,074,798 + +0.3
3,074,799 - +0.5
3,074,802 + +0.7
3,074,843 + +0.1
3,074,844 - -0.0
3,074,847 + +1.0
3,074,848 - +0.6
3,074,848 - -0.2
3,074,848 - +0.1
3,074,848 - -1.9
3,074,989 - +0.6
3,075,029 + +0.2
3,075,192 + +0.3
3,075,193 - -0.0
3,075,193 - +0.4
3,075,304 + IAI46_14495 0.45 +0.7
3,075,304 + IAI46_14495 0.45 +0.8
3,075,304 + IAI46_14495 0.45 -0.2
3,075,386 + IAI46_14495 0.78 +0.1
3,075,644 + IAI46_14500 0.20 -0.0
3,075,644 + IAI46_14500 0.20 +0.0
3,075,646 + IAI46_14500 0.21 -0.2
3,075,646 + IAI46_14500 0.21 -1.3
3,075,647 - IAI46_14500 0.21 -2.0
3,075,647 - IAI46_14500 0.21 +0.5
3,075,766 - IAI46_14500 0.39 -0.2
3,075,932 + IAI46_14500 0.64 -1.2
3,076,090 + IAI46_14500 0.88 +0.9
3,076,116 - -0.2
3,076,135 - -0.5
3,076,135 - -0.4
3,076,154 + -0.6
3,076,155 - +1.8
3,076,162 + +0.2
3,076,162 + -1.8
3,076,163 - +1.6
3,076,163 - +0.2
3,076,167 - +0.2
3,076,179 + +0.1
3,076,189 + -0.1
3,076,190 - +1.4
3,076,206 - +0.7
3,076,206 - -0.4
3,076,206 - +0.7
3,076,251 + +0.4
3,076,277 - -0.7
3,076,297 - +0.3

Or see this region's nucleotide sequence