Strain Fitness in Serratia liquefaciens MT49 around IAI46_14390

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14385 and IAI46_14390 are separated by 666 nucleotidesIAI46_14390 and IAI46_14395 are separated by 96 nucleotides IAI46_14385: IAI46_14385 - GNAT family N-acetyltransferase, at 3,051,851 to 3,052,291 _14385 IAI46_14390: IAI46_14390 - glutamine amidotransferase, at 3,052,958 to 3,053,530 _14390 IAI46_14395: IAI46_14395 - alpha/beta hydrolase, at 3,053,627 to 3,054,316 _14395 Position (kb) 3052 3053 3054Strain fitness (log2 ratio) -2 -1 0 1at 3052.097 kb on + strand, within IAI46_14385at 3052.122 kb on + strand, within IAI46_14385at 3052.238 kb on - strand, within IAI46_14385at 3052.414 kb on + strandat 3052.477 kb on - strandat 3052.512 kb on + strandat 3052.512 kb on + strandat 3052.516 kb on + strandat 3052.517 kb on - strandat 3052.610 kb on - strandat 3052.669 kb on - strandat 3052.676 kb on + strandat 3052.689 kb on - strandat 3052.699 kb on + strandat 3052.844 kb on + strandat 3053.024 kb on - strand, within IAI46_14390at 3053.024 kb on - strand, within IAI46_14390at 3053.039 kb on + strand, within IAI46_14390at 3053.163 kb on + strand, within IAI46_14390at 3053.292 kb on + strand, within IAI46_14390at 3053.293 kb on - strand, within IAI46_14390at 3053.293 kb on - strand, within IAI46_14390at 3053.293 kb on - strand, within IAI46_14390at 3053.345 kb on - strand, within IAI46_14390at 3053.364 kb on - strand, within IAI46_14390at 3053.367 kb on - strand, within IAI46_14390at 3053.455 kb on + strand, within IAI46_14390at 3053.456 kb on - strand, within IAI46_14390at 3053.456 kb on - strand, within IAI46_14390at 3053.456 kb on - strand, within IAI46_14390at 3053.483 kb on - strandat 3053.939 kb on - strand, within IAI46_14395at 3053.949 kb on + strand, within IAI46_14395at 3053.950 kb on - strand, within IAI46_14395at 3054.051 kb on + strand, within IAI46_14395at 3054.052 kb on - strand, within IAI46_14395at 3054.108 kb on + strand, within IAI46_14395at 3054.108 kb on + strand, within IAI46_14395at 3054.109 kb on - strand, within IAI46_14395at 3054.296 kb on + strandat 3054.297 kb on - strandat 3054.412 kb on + strandat 3054.413 kb on - strandat 3054.413 kb on - strandat 3054.413 kb on - strandat 3054.414 kb on + strandat 3054.415 kb on - strandat 3054.426 kb on + strandat 3054.427 kb on - strandat 3054.427 kb on - strandat 3054.457 kb on - strandat 3054.461 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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3,052,097 + IAI46_14385 0.56 +0.2
3,052,122 + IAI46_14385 0.61 -0.2
3,052,238 - IAI46_14385 0.88 -0.3
3,052,414 + -0.0
3,052,477 - +0.5
3,052,512 + -0.5
3,052,512 + +0.0
3,052,516 + -1.2
3,052,517 - -0.3
3,052,610 - +0.4
3,052,669 - -0.7
3,052,676 + +1.1
3,052,689 - +1.2
3,052,699 + -0.9
3,052,844 + +0.4
3,053,024 - IAI46_14390 0.12 -0.1
3,053,024 - IAI46_14390 0.12 +0.5
3,053,039 + IAI46_14390 0.14 -0.6
3,053,163 + IAI46_14390 0.36 +1.2
3,053,292 + IAI46_14390 0.58 +1.6
3,053,293 - IAI46_14390 0.58 -0.2
3,053,293 - IAI46_14390 0.58 +0.0
3,053,293 - IAI46_14390 0.58 +0.8
3,053,345 - IAI46_14390 0.68 -0.4
3,053,364 - IAI46_14390 0.71 +0.8
3,053,367 - IAI46_14390 0.71 +1.5
3,053,455 + IAI46_14390 0.87 -0.8
3,053,456 - IAI46_14390 0.87 -0.2
3,053,456 - IAI46_14390 0.87 +1.2
3,053,456 - IAI46_14390 0.87 +0.2
3,053,483 - -0.3
3,053,939 - IAI46_14395 0.45 -0.4
3,053,949 + IAI46_14395 0.47 +1.0
3,053,950 - IAI46_14395 0.47 +0.4
3,054,051 + IAI46_14395 0.61 -0.7
3,054,052 - IAI46_14395 0.62 +0.6
3,054,108 + IAI46_14395 0.70 -0.4
3,054,108 + IAI46_14395 0.70 +0.8
3,054,109 - IAI46_14395 0.70 -0.8
3,054,296 + -1.8
3,054,297 - +0.1
3,054,412 + +0.4
3,054,413 - -0.9
3,054,413 - +0.5
3,054,413 - -0.0
3,054,414 + -0.5
3,054,415 - +1.7
3,054,426 + +0.6
3,054,427 - +0.3
3,054,427 - +0.5
3,054,457 - +0.3
3,054,461 - -0.7

Or see this region's nucleotide sequence