Strain Fitness in Serratia liquefaciens MT49 around IAI46_14080

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14075 and IAI46_14080 are separated by 234 nucleotidesIAI46_14080 and IAI46_14085 are separated by 75 nucleotidesIAI46_14085 and IAI46_14090 are separated by 247 nucleotides IAI46_14075: IAI46_14075 - SulP family inorganic anion transporter, at 2,987,931 to 2,989,634 _14075 IAI46_14080: IAI46_14080 - septation protein A, at 2,989,869 to 2,990,408 _14080 IAI46_14085: IAI46_14085 - acyl-CoA thioester hydrolase YciA, at 2,990,484 to 2,990,912 _14085 IAI46_14090: IAI46_14090 - LacI family DNA-binding transcriptional regulator, at 2,991,160 to 2,992,185 _14090 Position (kb) 2989 2990 2991Strain fitness (log2 ratio) -3 -2 -1 0 1at 2988.918 kb on + strand, within IAI46_14075at 2989.121 kb on - strand, within IAI46_14075at 2989.165 kb on - strand, within IAI46_14075at 2989.194 kb on - strand, within IAI46_14075at 2989.197 kb on - strand, within IAI46_14075at 2989.225 kb on - strand, within IAI46_14075at 2989.316 kb on + strand, within IAI46_14075at 2989.317 kb on - strand, within IAI46_14075at 2989.317 kb on - strand, within IAI46_14075at 2989.435 kb on + strand, within IAI46_14075at 2989.587 kb on + strandat 2989.650 kb on - strandat 2989.652 kb on - strandat 2989.668 kb on - strandat 2989.668 kb on - strandat 2989.677 kb on - strandat 2989.836 kb on + strandat 2990.372 kb on + strandat 2990.449 kb on + strandat 2990.483 kb on + strandat 2990.484 kb on - strandat 2990.549 kb on + strand, within IAI46_14085at 2990.645 kb on - strand, within IAI46_14085at 2990.647 kb on + strand, within IAI46_14085at 2990.653 kb on + strand, within IAI46_14085at 2990.666 kb on + strand, within IAI46_14085at 2990.667 kb on - strand, within IAI46_14085at 2990.704 kb on + strand, within IAI46_14085at 2990.704 kb on + strand, within IAI46_14085at 2990.704 kb on + strand, within IAI46_14085at 2990.705 kb on - strand, within IAI46_14085at 2990.712 kb on + strand, within IAI46_14085at 2990.713 kb on - strand, within IAI46_14085at 2990.744 kb on + strand, within IAI46_14085at 2990.744 kb on + strand, within IAI46_14085at 2990.828 kb on + strand, within IAI46_14085at 2990.833 kb on - strand, within IAI46_14085at 2991.026 kb on - strandat 2991.095 kb on + strandat 2991.095 kb on + strandat 2991.137 kb on - strandat 2991.149 kb on - strandat 2991.150 kb on + strandat 2991.151 kb on - strandat 2991.151 kb on - strandat 2991.154 kb on + strandat 2991.204 kb on - strandat 2991.212 kb on + strandat 2991.216 kb on + strandat 2991.223 kb on - strandat 2991.229 kb on - strandat 2991.357 kb on + strand, within IAI46_14090

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,988,918 + IAI46_14075 0.58 -0.1
2,989,121 - IAI46_14075 0.70 +0.5
2,989,165 - IAI46_14075 0.72 -0.5
2,989,194 - IAI46_14075 0.74 -0.6
2,989,197 - IAI46_14075 0.74 +0.4
2,989,225 - IAI46_14075 0.76 +0.3
2,989,316 + IAI46_14075 0.81 -0.8
2,989,317 - IAI46_14075 0.81 -0.4
2,989,317 - IAI46_14075 0.81 +0.0
2,989,435 + IAI46_14075 0.88 +0.4
2,989,587 + +0.2
2,989,650 - +0.2
2,989,652 - +0.9
2,989,668 - +0.5
2,989,668 - -0.7
2,989,677 - -0.2
2,989,836 + +1.1
2,990,372 + -0.3
2,990,449 + +1.3
2,990,483 + -0.7
2,990,484 - -0.4
2,990,549 + IAI46_14085 0.15 +0.8
2,990,645 - IAI46_14085 0.38 +0.2
2,990,647 + IAI46_14085 0.38 -0.2
2,990,653 + IAI46_14085 0.39 -0.3
2,990,666 + IAI46_14085 0.42 +0.2
2,990,667 - IAI46_14085 0.43 +0.3
2,990,704 + IAI46_14085 0.51 +0.5
2,990,704 + IAI46_14085 0.51 -0.1
2,990,704 + IAI46_14085 0.51 +0.1
2,990,705 - IAI46_14085 0.52 -1.4
2,990,712 + IAI46_14085 0.53 +0.7
2,990,713 - IAI46_14085 0.53 -0.5
2,990,744 + IAI46_14085 0.61 -0.0
2,990,744 + IAI46_14085 0.61 +0.2
2,990,828 + IAI46_14085 0.80 +1.3
2,990,833 - IAI46_14085 0.81 -0.7
2,991,026 - +0.7
2,991,095 + -3.0
2,991,095 + -0.1
2,991,137 - -0.2
2,991,149 - +0.1
2,991,150 + -0.1
2,991,151 - -1.1
2,991,151 - -0.7
2,991,154 + +1.0
2,991,204 - +0.4
2,991,212 + -0.5
2,991,216 + +0.5
2,991,223 - +0.6
2,991,229 - -1.0
2,991,357 + IAI46_14090 0.19 +0.8

Or see this region's nucleotide sequence