Strain Fitness in Serratia liquefaciens MT49 around IAI46_14025

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14020 and IAI46_14025 overlap by 1 nucleotidesIAI46_14025 and IAI46_14030 are separated by 15 nucleotides IAI46_14020: IAI46_14020 - anthranilate synthase component 1, at 2,977,290 to 2,978,849 _14020 IAI46_14025: IAI46_14025 - glutamine amidotransferase, at 2,978,849 to 2,979,430 _14025 IAI46_14030: IAI46_14030 - anthranilate phosphoribosyltransferase, at 2,979,446 to 2,980,444 _14030 Position (kb) 2978 2979 2980Strain fitness (log2 ratio) -1 0 1 2at 2978.127 kb on + strand, within IAI46_14020at 2978.160 kb on + strand, within IAI46_14020at 2978.160 kb on + strand, within IAI46_14020at 2978.160 kb on + strand, within IAI46_14020at 2978.160 kb on + strand, within IAI46_14020at 2978.161 kb on - strand, within IAI46_14020at 2978.162 kb on + strand, within IAI46_14020at 2978.162 kb on + strand, within IAI46_14020at 2978.163 kb on - strand, within IAI46_14020at 2978.163 kb on - strand, within IAI46_14020at 2978.163 kb on - strand, within IAI46_14020at 2978.172 kb on - strand, within IAI46_14020at 2978.227 kb on - strand, within IAI46_14020at 2978.354 kb on + strand, within IAI46_14020at 2978.354 kb on + strand, within IAI46_14020at 2978.354 kb on + strand, within IAI46_14020at 2978.536 kb on - strand, within IAI46_14020at 2978.546 kb on + strand, within IAI46_14020at 2978.547 kb on - strand, within IAI46_14020at 2978.576 kb on + strand, within IAI46_14020at 2978.649 kb on + strand, within IAI46_14020at 2978.681 kb on + strand, within IAI46_14020at 2978.682 kb on - strand, within IAI46_14020at 2978.682 kb on - strand, within IAI46_14020at 2978.701 kb on - strandat 2978.744 kb on - strandat 2978.940 kb on - strand, within IAI46_14025at 2979.429 kb on - strandat 2979.470 kb on + strandat 2979.659 kb on + strand, within IAI46_14030at 2979.709 kb on + strand, within IAI46_14030at 2979.710 kb on - strand, within IAI46_14030at 2979.882 kb on + strand, within IAI46_14030at 2979.937 kb on - strand, within IAI46_14030at 2979.973 kb on - strand, within IAI46_14030at 2980.027 kb on + strand, within IAI46_14030at 2980.283 kb on - strand, within IAI46_14030

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,978,127 + IAI46_14020 0.54 +0.0
2,978,160 + IAI46_14020 0.56 +1.0
2,978,160 + IAI46_14020 0.56 +0.5
2,978,160 + IAI46_14020 0.56 +0.8
2,978,160 + IAI46_14020 0.56 +0.5
2,978,161 - IAI46_14020 0.56 -0.4
2,978,162 + IAI46_14020 0.56 +1.8
2,978,162 + IAI46_14020 0.56 -0.4
2,978,163 - IAI46_14020 0.56 +0.4
2,978,163 - IAI46_14020 0.56 +1.1
2,978,163 - IAI46_14020 0.56 +0.2
2,978,172 - IAI46_14020 0.57 -1.3
2,978,227 - IAI46_14020 0.60 +0.3
2,978,354 + IAI46_14020 0.68 +1.6
2,978,354 + IAI46_14020 0.68 +0.1
2,978,354 + IAI46_14020 0.68 +0.2
2,978,536 - IAI46_14020 0.80 +0.1
2,978,546 + IAI46_14020 0.81 -0.1
2,978,547 - IAI46_14020 0.81 +0.6
2,978,576 + IAI46_14020 0.82 -0.7
2,978,649 + IAI46_14020 0.87 +0.3
2,978,681 + IAI46_14020 0.89 -0.2
2,978,682 - IAI46_14020 0.89 -0.2
2,978,682 - IAI46_14020 0.89 +0.0
2,978,701 - -0.4
2,978,744 - -0.0
2,978,940 - IAI46_14025 0.16 -0.9
2,979,429 - +1.3
2,979,470 + +0.1
2,979,659 + IAI46_14030 0.21 +0.8
2,979,709 + IAI46_14030 0.26 +0.5
2,979,710 - IAI46_14030 0.26 -0.1
2,979,882 + IAI46_14030 0.44 +1.5
2,979,937 - IAI46_14030 0.49 -0.3
2,979,973 - IAI46_14030 0.53 -0.0
2,980,027 + IAI46_14030 0.58 +0.6
2,980,283 - IAI46_14030 0.84 -0.7

Or see this region's nucleotide sequence