Strain Fitness in Serratia liquefaciens MT49 around IAI46_13410

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13395 and IAI46_13400 are separated by 34 nucleotidesIAI46_13400 and IAI46_13405 are separated by 34 nucleotidesIAI46_13405 and IAI46_13410 are separated by 59 nucleotidesIAI46_13410 and IAI46_13415 are separated by 92 nucleotidesIAI46_13415 and IAI46_13420 are separated by 306 nucleotides IAI46_13395: IAI46_13395 - copper-translocating P-type ATPase, at 2,863,522 to 2,866,062 _13395 IAI46_13400: IAI46_13400 - glutaredoxin family protein, at 2,866,097 to 2,866,405 _13400 IAI46_13405: IAI46_13405 - Cu(I)-responsive transcriptional regulator, at 2,866,440 to 2,866,940 _13405 IAI46_13410: IAI46_13410 - heavy-metal-associated domain-containing protein, at 2,867,000 to 2,867,200 _13410 IAI46_13415: IAI46_13415 - DUF1471 domain-containing protein, at 2,867,293 to 2,867,553 _13415 IAI46_13420: IAI46_13420 - tRNA 2-thiocytidine(32) synthetase TtcA, at 2,867,860 to 2,868,792 _13420 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -1 0 1 2at 2866.052 kb on + strandat 2866.131 kb on - strand, within IAI46_13400at 2866.131 kb on - strand, within IAI46_13400at 2866.257 kb on + strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.258 kb on - strand, within IAI46_13400at 2866.261 kb on + strand, within IAI46_13400at 2866.307 kb on + strand, within IAI46_13400at 2866.413 kb on + strandat 2866.497 kb on + strand, within IAI46_13405at 2866.554 kb on + strand, within IAI46_13405at 2866.570 kb on + strand, within IAI46_13405at 2866.570 kb on + strand, within IAI46_13405at 2866.570 kb on + strand, within IAI46_13405at 2866.571 kb on - strand, within IAI46_13405at 2866.586 kb on + strand, within IAI46_13405at 2866.680 kb on - strand, within IAI46_13405at 2866.886 kb on + strand, within IAI46_13405at 2866.887 kb on - strand, within IAI46_13405at 2866.999 kb on + strandat 2867.439 kb on + strand, within IAI46_13415at 2867.444 kb on + strand, within IAI46_13415at 2867.552 kb on - strandat 2867.651 kb on + strandat 2867.675 kb on + strandat 2867.811 kb on + strandat 2867.880 kb on + strandat 2867.896 kb on + strandat 2867.897 kb on - strandat 2868.006 kb on + strand, within IAI46_13420at 2868.016 kb on + strand, within IAI46_13420at 2868.016 kb on + strand, within IAI46_13420at 2868.017 kb on - strand, within IAI46_13420at 2868.120 kb on + strand, within IAI46_13420at 2868.181 kb on + strand, within IAI46_13420at 2868.181 kb on + strand, within IAI46_13420

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,866,052 + +0.1
2,866,131 - IAI46_13400 0.11 -0.7
2,866,131 - IAI46_13400 0.11 +0.5
2,866,257 + IAI46_13400 0.52 +0.6
2,866,258 - IAI46_13400 0.52 +0.2
2,866,258 - IAI46_13400 0.52 -0.1
2,866,258 - IAI46_13400 0.52 +1.1
2,866,258 - IAI46_13400 0.52 -1.7
2,866,258 - IAI46_13400 0.52 +0.3
2,866,258 - IAI46_13400 0.52 -0.8
2,866,261 + IAI46_13400 0.53 -0.9
2,866,307 + IAI46_13400 0.68 +1.8
2,866,413 + +0.3
2,866,497 + IAI46_13405 0.11 -0.9
2,866,554 + IAI46_13405 0.23 +0.3
2,866,570 + IAI46_13405 0.26 +0.3
2,866,570 + IAI46_13405 0.26 +0.3
2,866,570 + IAI46_13405 0.26 +1.1
2,866,571 - IAI46_13405 0.26 +0.9
2,866,586 + IAI46_13405 0.29 -0.1
2,866,680 - IAI46_13405 0.48 +0.5
2,866,886 + IAI46_13405 0.89 -1.2
2,866,887 - IAI46_13405 0.89 +0.9
2,866,999 + -0.1
2,867,439 + IAI46_13415 0.56 +0.7
2,867,444 + IAI46_13415 0.58 +0.0
2,867,552 - +1.0
2,867,651 + +0.5
2,867,675 + +0.9
2,867,811 + -1.3
2,867,880 + +0.3
2,867,896 + +0.0
2,867,897 - -0.8
2,868,006 + IAI46_13420 0.16 +1.0
2,868,016 + IAI46_13420 0.17 +0.8
2,868,016 + IAI46_13420 0.17 +0.9
2,868,017 - IAI46_13420 0.17 -0.6
2,868,120 + IAI46_13420 0.28 +0.7
2,868,181 + IAI46_13420 0.34 -0.9
2,868,181 + IAI46_13420 0.34 -1.1

Or see this region's nucleotide sequence