Strain Fitness in Serratia liquefaciens MT49 around IAI46_13080

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13075 and IAI46_13080 are separated by 84 nucleotidesIAI46_13080 and IAI46_13085 are separated by 172 nucleotides IAI46_13075: IAI46_13075 - KUP/HAK/KT family potassium transporter, at 2,789,885 to 2,791,765 _13075 IAI46_13080: IAI46_13080 - LysR family transcriptional regulator, at 2,791,850 to 2,792,758 _13080 IAI46_13085: IAI46_13085 - branched-chain amino acid ABC transporter permease, at 2,792,931 to 2,793,881 _13085 Position (kb) 2791 2792 2793Strain fitness (log2 ratio) -2 -1 0 1at 2791.153 kb on - strand, within IAI46_13075at 2791.205 kb on - strand, within IAI46_13075at 2791.399 kb on + strand, within IAI46_13075at 2791.402 kb on + strand, within IAI46_13075at 2791.692 kb on - strandat 2791.727 kb on + strandat 2791.781 kb on - strandat 2791.781 kb on - strandat 2791.933 kb on - strandat 2791.935 kb on + strandat 2791.936 kb on - strandat 2791.972 kb on + strand, within IAI46_13080at 2791.973 kb on - strand, within IAI46_13080at 2791.973 kb on - strand, within IAI46_13080at 2792.308 kb on + strand, within IAI46_13080at 2792.308 kb on + strand, within IAI46_13080at 2792.329 kb on - strand, within IAI46_13080at 2792.329 kb on - strand, within IAI46_13080at 2792.329 kb on - strand, within IAI46_13080at 2792.346 kb on + strand, within IAI46_13080at 2792.359 kb on + strand, within IAI46_13080at 2792.360 kb on - strand, within IAI46_13080at 2792.363 kb on + strand, within IAI46_13080at 2792.492 kb on + strand, within IAI46_13080at 2792.492 kb on + strand, within IAI46_13080at 2792.493 kb on - strand, within IAI46_13080at 2792.496 kb on - strand, within IAI46_13080at 2792.526 kb on + strand, within IAI46_13080at 2792.526 kb on + strand, within IAI46_13080at 2792.526 kb on + strand, within IAI46_13080at 2792.526 kb on + strand, within IAI46_13080at 2792.549 kb on + strand, within IAI46_13080at 2792.930 kb on + strandat 2792.937 kb on - strandat 2792.944 kb on + strandat 2792.982 kb on + strandat 2792.982 kb on + strandat 2793.004 kb on - strandat 2793.016 kb on - strandat 2793.100 kb on + strand, within IAI46_13085at 2793.101 kb on - strand, within IAI46_13085at 2793.129 kb on + strand, within IAI46_13085at 2793.191 kb on + strand, within IAI46_13085at 2793.314 kb on - strand, within IAI46_13085at 2793.527 kb on - strand, within IAI46_13085

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,791,153 - IAI46_13075 0.67 +0.6
2,791,205 - IAI46_13075 0.70 +0.1
2,791,399 + IAI46_13075 0.80 -0.0
2,791,402 + IAI46_13075 0.81 +0.3
2,791,692 - -0.0
2,791,727 + +0.2
2,791,781 - +0.2
2,791,781 - +0.0
2,791,933 - +0.2
2,791,935 + -0.8
2,791,936 - +0.4
2,791,972 + IAI46_13080 0.13 +1.4
2,791,973 - IAI46_13080 0.14 -0.9
2,791,973 - IAI46_13080 0.14 +0.2
2,792,308 + IAI46_13080 0.50 +0.9
2,792,308 + IAI46_13080 0.50 +0.1
2,792,329 - IAI46_13080 0.53 +0.9
2,792,329 - IAI46_13080 0.53 -0.5
2,792,329 - IAI46_13080 0.53 -0.6
2,792,346 + IAI46_13080 0.55 -0.4
2,792,359 + IAI46_13080 0.56 +0.1
2,792,360 - IAI46_13080 0.56 -2.5
2,792,363 + IAI46_13080 0.56 +0.5
2,792,492 + IAI46_13080 0.71 -0.1
2,792,492 + IAI46_13080 0.71 +0.4
2,792,493 - IAI46_13080 0.71 +0.6
2,792,496 - IAI46_13080 0.71 +0.7
2,792,526 + IAI46_13080 0.74 -0.3
2,792,526 + IAI46_13080 0.74 +0.5
2,792,526 + IAI46_13080 0.74 -0.4
2,792,526 + IAI46_13080 0.74 +0.4
2,792,549 + IAI46_13080 0.77 +0.7
2,792,930 + +1.2
2,792,937 - +1.1
2,792,944 + +1.2
2,792,982 + +0.3
2,792,982 + -0.1
2,793,004 - +0.6
2,793,016 - +0.0
2,793,100 + IAI46_13085 0.18 +0.8
2,793,101 - IAI46_13085 0.18 +0.2
2,793,129 + IAI46_13085 0.21 +0.3
2,793,191 + IAI46_13085 0.27 -0.7
2,793,314 - IAI46_13085 0.40 +0.7
2,793,527 - IAI46_13085 0.63 +0.5

Or see this region's nucleotide sequence