Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12860 and IAI46_12865 are separated by 14 nucleotides IAI46_12865 and IAI46_12870 overlap by 4 nucleotides IAI46_12870 and IAI46_12875 are separated by 42 nucleotides
IAI46_12860: IAI46_12860 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 2,740,253 to 2,742,097
_12860
IAI46_12865: IAI46_12865 - myo-inosose-2 dehydratase, at 2,742,112 to 2,743,026
_12865
IAI46_12870: IAI46_12870 - SDR family oxidoreductase, at 2,743,023 to 2,743,835
_12870
IAI46_12875: IAI46_12875 - 4-hydroxybenzoate 3-monooxygenase, at 2,743,878 to 2,745,056
_12875
Position (kb)
2743
2744 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2742.095 kb on + strand at 2742.096 kb on - strand at 2742.096 kb on - strand at 2742.096 kb on - strand at 2742.121 kb on - strand at 2742.286 kb on - strand, within IAI46_12865 at 2742.326 kb on - strand, within IAI46_12865 at 2742.326 kb on - strand, within IAI46_12865 at 2742.345 kb on + strand, within IAI46_12865 at 2742.346 kb on - strand, within IAI46_12865 at 2742.582 kb on + strand, within IAI46_12865 at 2742.656 kb on + strand, within IAI46_12865 at 2742.823 kb on + strand, within IAI46_12865 at 2742.825 kb on + strand, within IAI46_12865 at 2742.826 kb on - strand, within IAI46_12865 at 2742.871 kb on - strand, within IAI46_12865 at 2742.871 kb on - strand, within IAI46_12865 at 2743.008 kb on + strand at 2743.020 kb on + strand at 2743.020 kb on + strand at 2743.022 kb on + strand at 2743.022 kb on + strand at 2743.023 kb on - strand at 2743.023 kb on - strand at 2743.023 kb on - strand at 2743.023 kb on - strand at 2743.037 kb on - strand at 2743.177 kb on + strand, within IAI46_12870 at 2743.270 kb on + strand, within IAI46_12870 at 2743.389 kb on + strand, within IAI46_12870 at 2743.409 kb on - strand, within IAI46_12870 at 2743.498 kb on - strand, within IAI46_12870 at 2743.632 kb on + strand, within IAI46_12870 at 2743.633 kb on - strand, within IAI46_12870 at 2743.649 kb on + strand, within IAI46_12870 at 2743.650 kb on - strand, within IAI46_12870 at 2743.766 kb on + strand at 2743.801 kb on - strand at 2743.951 kb on + strand at 2743.951 kb on + strand at 2743.952 kb on - strand at 2744.015 kb on + strand, within IAI46_12875 at 2744.078 kb on - strand, within IAI46_12875 at 2744.282 kb on + strand, within IAI46_12875 at 2744.395 kb on + strand, within IAI46_12875 at 2744.518 kb on + strand, within IAI46_12875 at 2744.531 kb on - strand, within IAI46_12875 at 2744.644 kb on - strand, within IAI46_12875 at 2744.644 kb on - strand, within IAI46_12875 at 2744.736 kb on - strand, within IAI46_12875
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,742,095 + -0.4 2,742,096 - -0.8 2,742,096 - +0.2 2,742,096 - +1.0 2,742,121 - -0.4 2,742,286 - IAI46_12865 0.19 +0.2 2,742,326 - IAI46_12865 0.23 +0.7 2,742,326 - IAI46_12865 0.23 +1.4 2,742,345 + IAI46_12865 0.25 +0.4 2,742,346 - IAI46_12865 0.26 +0.2 2,742,582 + IAI46_12865 0.51 +1.2 2,742,656 + IAI46_12865 0.59 -0.2 2,742,823 + IAI46_12865 0.78 -0.7 2,742,825 + IAI46_12865 0.78 +1.0 2,742,826 - IAI46_12865 0.78 -1.0 2,742,871 - IAI46_12865 0.83 +0.7 2,742,871 - IAI46_12865 0.83 -1.4 2,743,008 + +1.0 2,743,020 + +1.0 2,743,020 + -1.1 2,743,022 + +0.0 2,743,022 + -0.0 2,743,023 - +0.2 2,743,023 - -0.7 2,743,023 - +2.0 2,743,023 - -1.0 2,743,037 - +0.9 2,743,177 + IAI46_12870 0.19 +1.2 2,743,270 + IAI46_12870 0.30 +0.6 2,743,389 + IAI46_12870 0.45 +0.1 2,743,409 - IAI46_12870 0.47 +0.5 2,743,498 - IAI46_12870 0.58 -0.2 2,743,632 + IAI46_12870 0.75 +2.0 2,743,633 - IAI46_12870 0.75 +0.6 2,743,649 + IAI46_12870 0.77 -1.8 2,743,650 - IAI46_12870 0.77 +0.1 2,743,766 + -0.7 2,743,801 - -0.5 2,743,951 + -0.7 2,743,951 + +1.0 2,743,952 - -0.7 2,744,015 + IAI46_12875 0.12 -0.4 2,744,078 - IAI46_12875 0.17 -0.0 2,744,282 + IAI46_12875 0.34 -0.7 2,744,395 + IAI46_12875 0.44 -0.4 2,744,518 + IAI46_12875 0.54 +0.1 2,744,531 - IAI46_12875 0.55 -1.1 2,744,644 - IAI46_12875 0.65 -1.1 2,744,644 - IAI46_12875 0.65 +1.2 2,744,736 - IAI46_12875 0.73 -0.2
Or see this region's nucleotide sequence