Strain Fitness in Serratia liquefaciens MT49 around IAI46_12825

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12820 and IAI46_12825 are separated by 207 nucleotidesIAI46_12825 and IAI46_12830 are separated by 129 nucleotides IAI46_12820: IAI46_12820 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,730,792 to 2,732,159 _12820 IAI46_12825: IAI46_12825 - substrate-binding domain-containing protein, at 2,732,367 to 2,733,293 _12825 IAI46_12830: IAI46_12830 - Gfo/Idh/MocA family oxidoreductase, at 2,733,423 to 2,734,544 _12830 Position (kb) 2732 2733 2734Strain fitness (log2 ratio) -2 -1 0 1at 2731.597 kb on - strand, within IAI46_12820at 2731.674 kb on + strand, within IAI46_12820at 2731.675 kb on - strand, within IAI46_12820at 2731.794 kb on + strand, within IAI46_12820at 2731.984 kb on - strand, within IAI46_12820at 2732.033 kb on + strandat 2732.034 kb on - strandat 2732.109 kb on - strandat 2732.152 kb on - strandat 2732.160 kb on - strandat 2732.160 kb on - strandat 2732.275 kb on - strandat 2732.369 kb on - strandat 2732.390 kb on - strandat 2732.439 kb on - strandat 2732.606 kb on + strand, within IAI46_12825at 2732.652 kb on - strand, within IAI46_12825at 2732.652 kb on - strand, within IAI46_12825at 2732.709 kb on - strand, within IAI46_12825at 2732.774 kb on + strand, within IAI46_12825at 2732.824 kb on - strand, within IAI46_12825at 2732.835 kb on - strand, within IAI46_12825at 2733.051 kb on - strand, within IAI46_12825at 2733.101 kb on + strand, within IAI46_12825at 2733.168 kb on - strand, within IAI46_12825at 2733.172 kb on + strand, within IAI46_12825at 2733.172 kb on + strand, within IAI46_12825at 2733.172 kb on + strand, within IAI46_12825at 2733.173 kb on - strand, within IAI46_12825at 2733.276 kb on + strandat 2733.277 kb on - strandat 2733.277 kb on - strandat 2733.294 kb on - strandat 2733.308 kb on + strandat 2733.308 kb on + strandat 2733.326 kb on - strandat 2733.378 kb on + strandat 2733.386 kb on - strandat 2733.518 kb on + strandat 2733.651 kb on - strand, within IAI46_12830at 2733.768 kb on - strand, within IAI46_12830at 2733.900 kb on - strand, within IAI46_12830at 2734.108 kb on - strand, within IAI46_12830

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,731,597 - IAI46_12820 0.59 +0.3
2,731,674 + IAI46_12820 0.64 -1.2
2,731,675 - IAI46_12820 0.65 +0.1
2,731,794 + IAI46_12820 0.73 -0.0
2,731,984 - IAI46_12820 0.87 +1.0
2,732,033 + -0.8
2,732,034 - +1.0
2,732,109 - +0.1
2,732,152 - +0.1
2,732,160 - +0.2
2,732,160 - +1.2
2,732,275 - +0.6
2,732,369 - +1.2
2,732,390 - -0.5
2,732,439 - -0.0
2,732,606 + IAI46_12825 0.26 +0.1
2,732,652 - IAI46_12825 0.31 -0.1
2,732,652 - IAI46_12825 0.31 +0.9
2,732,709 - IAI46_12825 0.37 +0.3
2,732,774 + IAI46_12825 0.44 -1.1
2,732,824 - IAI46_12825 0.49 +0.5
2,732,835 - IAI46_12825 0.50 -2.6
2,733,051 - IAI46_12825 0.74 -2.2
2,733,101 + IAI46_12825 0.79 +0.7
2,733,168 - IAI46_12825 0.86 -0.4
2,733,172 + IAI46_12825 0.87 -0.2
2,733,172 + IAI46_12825 0.87 -0.3
2,733,172 + IAI46_12825 0.87 +0.6
2,733,173 - IAI46_12825 0.87 +0.5
2,733,276 + +1.2
2,733,277 - -0.1
2,733,277 - +0.8
2,733,294 - +0.1
2,733,308 + +0.0
2,733,308 + -0.4
2,733,326 - +0.9
2,733,378 + -1.1
2,733,386 - +0.1
2,733,518 + +0.5
2,733,651 - IAI46_12830 0.20 -0.6
2,733,768 - IAI46_12830 0.31 -0.7
2,733,900 - IAI46_12830 0.43 +0.4
2,734,108 - IAI46_12830 0.61 +0.4

Or see this region's nucleotide sequence