Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12730 and IAI46_12735 are separated by 47 nucleotides IAI46_12735 and IAI46_12740 are separated by 148 nucleotides
IAI46_12730: IAI46_12730 - type II asparaginase, at 2,709,245 to 2,710,294
_12730
IAI46_12735: IAI46_12735 - agmatine deiminase family protein, at 2,710,342 to 2,711,472
_12735
IAI46_12740: IAI46_12740 - LysR family transcriptional regulator, at 2,711,621 to 2,712,484
_12740
Position (kb)
2710
2711
2712 Strain fitness (log2 ratio)
-1
0
1
2 at 2709.379 kb on + strand, within IAI46_12730 at 2709.397 kb on + strand, within IAI46_12730 at 2709.625 kb on + strand, within IAI46_12730 at 2709.658 kb on - strand, within IAI46_12730 at 2709.870 kb on + strand, within IAI46_12730 at 2709.976 kb on + strand, within IAI46_12730 at 2709.976 kb on + strand, within IAI46_12730 at 2709.980 kb on + strand, within IAI46_12730 at 2710.004 kb on + strand, within IAI46_12730 at 2710.010 kb on + strand, within IAI46_12730 at 2710.031 kb on - strand, within IAI46_12730 at 2710.289 kb on + strand at 2710.290 kb on - strand at 2710.290 kb on - strand at 2710.343 kb on + strand at 2710.343 kb on + strand at 2710.343 kb on + strand at 2710.523 kb on + strand, within IAI46_12735 at 2710.523 kb on + strand, within IAI46_12735 at 2710.603 kb on - strand, within IAI46_12735 at 2710.612 kb on + strand, within IAI46_12735 at 2710.613 kb on - strand, within IAI46_12735 at 2711.119 kb on - strand, within IAI46_12735 at 2711.119 kb on - strand, within IAI46_12735 at 2711.552 kb on + strand at 2711.552 kb on + strand at 2711.552 kb on + strand at 2711.552 kb on + strand at 2711.553 kb on - strand at 2711.553 kb on - strand at 2711.553 kb on - strand at 2711.553 kb on - strand at 2711.553 kb on - strand at 2711.553 kb on - strand at 2711.604 kb on - strand at 2711.608 kb on - strand at 2711.960 kb on - strand, within IAI46_12740 at 2712.085 kb on + strand, within IAI46_12740 at 2712.085 kb on + strand, within IAI46_12740 at 2712.460 kb on - strand at 2712.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,709,379 + IAI46_12730 0.13 +0.4 2,709,397 + IAI46_12730 0.14 -0.2 2,709,625 + IAI46_12730 0.36 -0.1 2,709,658 - IAI46_12730 0.39 -1.2 2,709,870 + IAI46_12730 0.60 -0.8 2,709,976 + IAI46_12730 0.70 +0.9 2,709,976 + IAI46_12730 0.70 -0.4 2,709,980 + IAI46_12730 0.70 -0.1 2,710,004 + IAI46_12730 0.72 +1.8 2,710,010 + IAI46_12730 0.73 +0.4 2,710,031 - IAI46_12730 0.75 -0.8 2,710,289 + +0.2 2,710,290 - +0.6 2,710,290 - +0.3 2,710,343 + -0.2 2,710,343 + +1.0 2,710,343 + +0.8 2,710,523 + IAI46_12735 0.16 -1.1 2,710,523 + IAI46_12735 0.16 +0.2 2,710,603 - IAI46_12735 0.23 -1.3 2,710,612 + IAI46_12735 0.24 +1.6 2,710,613 - IAI46_12735 0.24 +0.2 2,711,119 - IAI46_12735 0.69 -0.6 2,711,119 - IAI46_12735 0.69 +0.6 2,711,552 + +0.3 2,711,552 + +0.6 2,711,552 + -1.6 2,711,552 + +0.2 2,711,553 - +0.8 2,711,553 - -0.4 2,711,553 - -0.6 2,711,553 - +0.0 2,711,553 - -0.8 2,711,553 - +0.4 2,711,604 - +0.5 2,711,608 - -0.1 2,711,960 - IAI46_12740 0.39 +0.2 2,712,085 + IAI46_12740 0.54 +1.4 2,712,085 + IAI46_12740 0.54 +0.3 2,712,460 - -0.1 2,712,460 - +0.1
Or see this region's nucleotide sequence