Strain Fitness in Serratia liquefaciens MT49 around IAI46_12735

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_12730 and IAI46_12735 are separated by 47 nucleotidesIAI46_12735 and IAI46_12740 are separated by 148 nucleotides IAI46_12730: IAI46_12730 - type II asparaginase, at 2,709,245 to 2,710,294 _12730 IAI46_12735: IAI46_12735 - agmatine deiminase family protein, at 2,710,342 to 2,711,472 _12735 IAI46_12740: IAI46_12740 - LysR family transcriptional regulator, at 2,711,621 to 2,712,484 _12740 Position (kb) 2710 2711 2712Strain fitness (log2 ratio) -1 0 1 2at 2709.379 kb on + strand, within IAI46_12730at 2709.397 kb on + strand, within IAI46_12730at 2709.625 kb on + strand, within IAI46_12730at 2709.658 kb on - strand, within IAI46_12730at 2709.870 kb on + strand, within IAI46_12730at 2709.976 kb on + strand, within IAI46_12730at 2709.976 kb on + strand, within IAI46_12730at 2709.980 kb on + strand, within IAI46_12730at 2710.004 kb on + strand, within IAI46_12730at 2710.010 kb on + strand, within IAI46_12730at 2710.031 kb on - strand, within IAI46_12730at 2710.289 kb on + strandat 2710.290 kb on - strandat 2710.290 kb on - strandat 2710.343 kb on + strandat 2710.343 kb on + strandat 2710.343 kb on + strandat 2710.523 kb on + strand, within IAI46_12735at 2710.523 kb on + strand, within IAI46_12735at 2710.603 kb on - strand, within IAI46_12735at 2710.612 kb on + strand, within IAI46_12735at 2710.613 kb on - strand, within IAI46_12735at 2711.119 kb on - strand, within IAI46_12735at 2711.119 kb on - strand, within IAI46_12735at 2711.552 kb on + strandat 2711.552 kb on + strandat 2711.552 kb on + strandat 2711.552 kb on + strandat 2711.553 kb on - strandat 2711.553 kb on - strandat 2711.553 kb on - strandat 2711.553 kb on - strandat 2711.553 kb on - strandat 2711.553 kb on - strandat 2711.604 kb on - strandat 2711.608 kb on - strandat 2711.960 kb on - strand, within IAI46_12740at 2712.085 kb on + strand, within IAI46_12740at 2712.085 kb on + strand, within IAI46_12740at 2712.460 kb on - strandat 2712.460 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
remove
2,709,379 + IAI46_12730 0.13 +0.4
2,709,397 + IAI46_12730 0.14 -0.2
2,709,625 + IAI46_12730 0.36 -0.1
2,709,658 - IAI46_12730 0.39 -1.2
2,709,870 + IAI46_12730 0.60 -0.8
2,709,976 + IAI46_12730 0.70 +0.9
2,709,976 + IAI46_12730 0.70 -0.4
2,709,980 + IAI46_12730 0.70 -0.1
2,710,004 + IAI46_12730 0.72 +1.8
2,710,010 + IAI46_12730 0.73 +0.4
2,710,031 - IAI46_12730 0.75 -0.8
2,710,289 + +0.2
2,710,290 - +0.6
2,710,290 - +0.3
2,710,343 + -0.2
2,710,343 + +1.0
2,710,343 + +0.8
2,710,523 + IAI46_12735 0.16 -1.1
2,710,523 + IAI46_12735 0.16 +0.2
2,710,603 - IAI46_12735 0.23 -1.3
2,710,612 + IAI46_12735 0.24 +1.6
2,710,613 - IAI46_12735 0.24 +0.2
2,711,119 - IAI46_12735 0.69 -0.6
2,711,119 - IAI46_12735 0.69 +0.6
2,711,552 + +0.3
2,711,552 + +0.6
2,711,552 + -1.6
2,711,552 + +0.2
2,711,553 - +0.8
2,711,553 - -0.4
2,711,553 - -0.6
2,711,553 - +0.0
2,711,553 - -0.8
2,711,553 - +0.4
2,711,604 - +0.5
2,711,608 - -0.1
2,711,960 - IAI46_12740 0.39 +0.2
2,712,085 + IAI46_12740 0.54 +1.4
2,712,085 + IAI46_12740 0.54 +0.3
2,712,460 - -0.1
2,712,460 - +0.1

Or see this region's nucleotide sequence