Strain Fitness in Serratia liquefaciens MT49 around IAI46_12015

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12010 and IAI46_12015 are separated by 246 nucleotidesIAI46_12015 and IAI46_12020 are separated by 17 nucleotidesIAI46_12020 and IAI46_12025 are separated by 35 nucleotides IAI46_12010: IAI46_12010 - GNAT family N-acetyltransferase, at 2,541,464 to 2,542,312 _12010 IAI46_12015: IAI46_12015 - MurR/RpiR family transcriptional regulator, at 2,542,559 to 2,543,431 _12015 IAI46_12020: IAI46_12020 - D-alanyl-D-alanine dipeptidase, at 2,543,449 to 2,544,012 _12020 IAI46_12025: IAI46_12025 - ABC transporter substrate-binding protein, at 2,544,048 to 2,545,598 _12025 Position (kb) 2542 2543 2544Strain fitness (log2 ratio) -1 0 1at 2541.729 kb on + strand, within IAI46_12010at 2542.125 kb on + strand, within IAI46_12010at 2542.391 kb on + strandat 2542.392 kb on - strandat 2542.506 kb on + strandat 2542.558 kb on + strandat 2542.558 kb on + strandat 2542.999 kb on - strand, within IAI46_12015at 2543.030 kb on + strand, within IAI46_12015at 2543.067 kb on - strand, within IAI46_12015at 2543.090 kb on + strand, within IAI46_12015at 2543.091 kb on - strand, within IAI46_12015at 2543.091 kb on - strand, within IAI46_12015at 2543.742 kb on + strand, within IAI46_12020at 2544.004 kb on + strandat 2544.047 kb on + strandat 2544.246 kb on + strand, within IAI46_12025at 2544.247 kb on - strand, within IAI46_12025at 2544.343 kb on + strand, within IAI46_12025

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,541,729 + IAI46_12010 0.31 -0.8
2,542,125 + IAI46_12010 0.78 +0.3
2,542,391 + +0.0
2,542,392 - -0.2
2,542,506 + +1.1
2,542,558 + +0.7
2,542,558 + -0.1
2,542,999 - IAI46_12015 0.50 +1.5
2,543,030 + IAI46_12015 0.54 +0.3
2,543,067 - IAI46_12015 0.58 +0.0
2,543,090 + IAI46_12015 0.61 -0.1
2,543,091 - IAI46_12015 0.61 +0.5
2,543,091 - IAI46_12015 0.61 +0.8
2,543,742 + IAI46_12020 0.52 +0.7
2,544,004 + -0.2
2,544,047 + -0.1
2,544,246 + IAI46_12025 0.13 +0.5
2,544,247 - IAI46_12025 0.13 +0.7
2,544,343 + IAI46_12025 0.19 +0.4

Or see this region's nucleotide sequence