Strain Fitness in Serratia liquefaciens MT49 around IAI46_11875

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11870 and IAI46_11875 are separated by 160 nucleotidesIAI46_11875 and IAI46_11880 are separated by 224 nucleotides IAI46_11870: IAI46_11870 - FAD-dependent urate hydroxylase HpxO, at 2,511,687 to 2,512,844 _11870 IAI46_11875: IAI46_11875 - DUF1003 domain-containing protein, at 2,513,005 to 2,513,514 _11875 IAI46_11880: IAI46_11880 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 2,513,739 to 2,515,946 _11880 Position (kb) 2513 2514Strain fitness (log2 ratio) -1 0 1at 2512.357 kb on + strand, within IAI46_11870at 2512.358 kb on - strand, within IAI46_11870at 2512.358 kb on - strand, within IAI46_11870at 2512.504 kb on + strand, within IAI46_11870at 2512.505 kb on - strand, within IAI46_11870at 2512.684 kb on + strand, within IAI46_11870at 2512.684 kb on + strand, within IAI46_11870at 2512.685 kb on - strand, within IAI46_11870at 2512.802 kb on + strandat 2512.860 kb on - strandat 2512.983 kb on - strandat 2512.995 kb on - strandat 2513.291 kb on - strand, within IAI46_11875at 2513.293 kb on - strand, within IAI46_11875at 2513.293 kb on - strand, within IAI46_11875at 2513.506 kb on + strandat 2513.515 kb on + strandat 2513.516 kb on - strandat 2513.541 kb on + strandat 2513.543 kb on + strandat 2513.543 kb on + strandat 2513.548 kb on + strandat 2513.549 kb on - strandat 2513.625 kb on + strandat 2513.625 kb on + strandat 2513.633 kb on + strandat 2513.638 kb on + strandat 2513.638 kb on + strandat 2513.638 kb on + strandat 2513.643 kb on - strandat 2513.707 kb on + strandat 2513.707 kb on + strandat 2513.746 kb on + strandat 2513.840 kb on + strandat 2513.874 kb on + strandat 2513.875 kb on - strandat 2513.958 kb on + strandat 2514.048 kb on + strand, within IAI46_11880at 2514.048 kb on + strand, within IAI46_11880at 2514.049 kb on - strand, within IAI46_11880at 2514.050 kb on + strand, within IAI46_11880at 2514.051 kb on - strand, within IAI46_11880at 2514.365 kb on - strand, within IAI46_11880at 2514.473 kb on - strand, within IAI46_11880

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,512,357 + IAI46_11870 0.58 +0.7
2,512,358 - IAI46_11870 0.58 +0.0
2,512,358 - IAI46_11870 0.58 -0.4
2,512,504 + IAI46_11870 0.71 +0.8
2,512,505 - IAI46_11870 0.71 +0.5
2,512,684 + IAI46_11870 0.86 -0.2
2,512,684 + IAI46_11870 0.86 +0.5
2,512,685 - IAI46_11870 0.86 -0.0
2,512,802 + -0.2
2,512,860 - +0.2
2,512,983 - +0.6
2,512,995 - +0.8
2,513,291 - IAI46_11875 0.56 -0.2
2,513,293 - IAI46_11875 0.56 +1.2
2,513,293 - IAI46_11875 0.56 -0.1
2,513,506 + +0.9
2,513,515 + -0.3
2,513,516 - -0.1
2,513,541 + +0.5
2,513,543 + +1.0
2,513,543 + -0.1
2,513,548 + +0.2
2,513,549 - -0.2
2,513,625 + -0.1
2,513,625 + -0.3
2,513,633 + +1.3
2,513,638 + +0.1
2,513,638 + +0.6
2,513,638 + -0.5
2,513,643 - -0.2
2,513,707 + +1.2
2,513,707 + -0.9
2,513,746 + +0.9
2,513,840 + -1.1
2,513,874 + +0.6
2,513,875 - -1.1
2,513,958 + +0.1
2,514,048 + IAI46_11880 0.14 +0.3
2,514,048 + IAI46_11880 0.14 +0.2
2,514,049 - IAI46_11880 0.14 +0.5
2,514,050 + IAI46_11880 0.14 -0.8
2,514,051 - IAI46_11880 0.14 -0.1
2,514,365 - IAI46_11880 0.28 -1.6
2,514,473 - IAI46_11880 0.33 -0.4

Or see this region's nucleotide sequence