Strain Fitness in Serratia liquefaciens MT49 around IAI46_11070

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11065 and IAI46_11070 are separated by 55 nucleotidesIAI46_11070 and IAI46_11075 overlap by 8 nucleotidesIAI46_11075 and IAI46_11080 overlap by 1 nucleotides IAI46_11065: IAI46_11065 - YdiU family protein, at 2,337,457 to 2,338,899 _11065 IAI46_11070: IAI46_11070 - heme ABC transporter ATP-binding protein, at 2,338,955 to 2,339,740 _11070 IAI46_11075: IAI46_11075 - iron ABC transporter permease, at 2,339,733 to 2,340,737 _11075 IAI46_11080: IAI46_11080 - ABC transporter substrate-binding protein, at 2,340,737 to 2,341,567 _11080 Position (kb) 2338 2339 2340Strain fitness (log2 ratio) -1 0 1 2at 2337.962 kb on + strand, within IAI46_11065at 2338.010 kb on - strand, within IAI46_11065at 2338.103 kb on + strand, within IAI46_11065at 2338.104 kb on - strand, within IAI46_11065at 2338.182 kb on - strand, within IAI46_11065at 2338.215 kb on + strand, within IAI46_11065at 2338.264 kb on + strand, within IAI46_11065at 2338.265 kb on - strand, within IAI46_11065at 2338.266 kb on + strand, within IAI46_11065at 2338.405 kb on + strand, within IAI46_11065at 2338.406 kb on - strand, within IAI46_11065at 2338.534 kb on + strand, within IAI46_11065at 2338.535 kb on - strand, within IAI46_11065at 2338.556 kb on + strand, within IAI46_11065at 2338.557 kb on - strand, within IAI46_11065at 2338.557 kb on - strand, within IAI46_11065at 2338.633 kb on + strand, within IAI46_11065at 2338.732 kb on + strand, within IAI46_11065at 2338.732 kb on + strand, within IAI46_11065at 2338.884 kb on - strandat 2338.968 kb on + strandat 2339.000 kb on + strandat 2339.001 kb on - strandat 2339.001 kb on - strandat 2339.001 kb on - strandat 2339.003 kb on + strandat 2339.022 kb on + strandat 2339.093 kb on + strand, within IAI46_11070at 2339.094 kb on - strand, within IAI46_11070at 2339.116 kb on - strand, within IAI46_11070at 2339.116 kb on - strand, within IAI46_11070at 2339.177 kb on - strand, within IAI46_11070at 2339.200 kb on + strand, within IAI46_11070at 2339.214 kb on + strand, within IAI46_11070at 2339.214 kb on + strand, within IAI46_11070at 2339.306 kb on + strand, within IAI46_11070at 2339.531 kb on + strand, within IAI46_11070at 2339.602 kb on + strand, within IAI46_11070at 2339.603 kb on - strand, within IAI46_11070at 2339.609 kb on - strand, within IAI46_11070at 2339.631 kb on - strand, within IAI46_11070at 2339.656 kb on + strand, within IAI46_11070at 2339.701 kb on - strandat 2339.773 kb on - strandat 2339.773 kb on - strandat 2339.832 kb on + strandat 2339.852 kb on + strand, within IAI46_11075at 2339.934 kb on + strand, within IAI46_11075at 2339.935 kb on - strand, within IAI46_11075at 2339.960 kb on + strand, within IAI46_11075at 2340.059 kb on - strand, within IAI46_11075at 2340.059 kb on - strand, within IAI46_11075at 2340.059 kb on - strand, within IAI46_11075at 2340.121 kb on - strand, within IAI46_11075at 2340.333 kb on + strand, within IAI46_11075at 2340.335 kb on - strand, within IAI46_11075at 2340.335 kb on - strand, within IAI46_11075at 2340.380 kb on + strand, within IAI46_11075at 2340.381 kb on - strand, within IAI46_11075at 2340.381 kb on - strand, within IAI46_11075at 2340.389 kb on - strand, within IAI46_11075at 2340.525 kb on + strand, within IAI46_11075at 2340.532 kb on - strand, within IAI46_11075at 2340.583 kb on - strand, within IAI46_11075

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,337,962 + IAI46_11065 0.35 -0.7
2,338,010 - IAI46_11065 0.38 +1.7
2,338,103 + IAI46_11065 0.45 +1.0
2,338,104 - IAI46_11065 0.45 +1.3
2,338,182 - IAI46_11065 0.50 -0.7
2,338,215 + IAI46_11065 0.53 -0.9
2,338,264 + IAI46_11065 0.56 +0.7
2,338,265 - IAI46_11065 0.56 -0.3
2,338,266 + IAI46_11065 0.56 +0.7
2,338,405 + IAI46_11065 0.66 +0.4
2,338,406 - IAI46_11065 0.66 +0.0
2,338,534 + IAI46_11065 0.75 +0.4
2,338,535 - IAI46_11065 0.75 +0.7
2,338,556 + IAI46_11065 0.76 -0.8
2,338,557 - IAI46_11065 0.76 +1.7
2,338,557 - IAI46_11065 0.76 +0.2
2,338,633 + IAI46_11065 0.81 -0.3
2,338,732 + IAI46_11065 0.88 +0.3
2,338,732 + IAI46_11065 0.88 -0.9
2,338,884 - +0.2
2,338,968 + +0.2
2,339,000 + -1.1
2,339,001 - -0.3
2,339,001 - -0.0
2,339,001 - +0.1
2,339,003 + +0.2
2,339,022 + +0.3
2,339,093 + IAI46_11070 0.18 +1.6
2,339,094 - IAI46_11070 0.18 +0.2
2,339,116 - IAI46_11070 0.20 +0.2
2,339,116 - IAI46_11070 0.20 +2.3
2,339,177 - IAI46_11070 0.28 +1.0
2,339,200 + IAI46_11070 0.31 -0.4
2,339,214 + IAI46_11070 0.33 +0.5
2,339,214 + IAI46_11070 0.33 +0.6
2,339,306 + IAI46_11070 0.45 +0.2
2,339,531 + IAI46_11070 0.73 -0.9
2,339,602 + IAI46_11070 0.82 -0.8
2,339,603 - IAI46_11070 0.82 +0.3
2,339,609 - IAI46_11070 0.83 +0.8
2,339,631 - IAI46_11070 0.86 +0.6
2,339,656 + IAI46_11070 0.89 -0.1
2,339,701 - +1.0
2,339,773 - +0.5
2,339,773 - +1.1
2,339,832 + +0.1
2,339,852 + IAI46_11075 0.12 +0.7
2,339,934 + IAI46_11075 0.20 +0.5
2,339,935 - IAI46_11075 0.20 -0.1
2,339,960 + IAI46_11075 0.23 +0.8
2,340,059 - IAI46_11075 0.32 +0.7
2,340,059 - IAI46_11075 0.32 +0.4
2,340,059 - IAI46_11075 0.32 -0.1
2,340,121 - IAI46_11075 0.39 -1.4
2,340,333 + IAI46_11075 0.60 -1.0
2,340,335 - IAI46_11075 0.60 +0.7
2,340,335 - IAI46_11075 0.60 -1.1
2,340,380 + IAI46_11075 0.64 -0.7
2,340,381 - IAI46_11075 0.64 +0.7
2,340,381 - IAI46_11075 0.64 -0.0
2,340,389 - IAI46_11075 0.65 +0.3
2,340,525 + IAI46_11075 0.79 +1.6
2,340,532 - IAI46_11075 0.80 -0.7
2,340,583 - IAI46_11075 0.85 +1.3

Or see this region's nucleotide sequence