Strain Fitness in Serratia liquefaciens MT49 around IAI46_11050

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11035 and IAI46_11040 overlap by 4 nucleotidesIAI46_11040 and IAI46_11045 overlap by 4 nucleotidesIAI46_11045 and IAI46_11050 are separated by 174 nucleotidesIAI46_11050 and IAI46_11055 are separated by 57 nucleotides IAI46_11035: IAI46_11035 - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 2,331,813 to 2,333,477 _11035 IAI46_11040: IAI46_11040 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 2,333,474 to 2,333,821 _11040 IAI46_11045: IAI46_11045 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, at 2,333,818 to 2,334,210 _11045 IAI46_11050: IAI46_11050 - C40 family peptidase, at 2,334,385 to 2,334,849 _11050 IAI46_11055: IAI46_11055 - lipoate--protein ligase A, at 2,334,907 to 2,335,920 _11055 Position (kb) 2334 2335Strain fitness (log2 ratio) -2 -1 0 1at 2334.382 kb on - strandat 2334.382 kb on - strandat 2334.397 kb on - strandat 2334.435 kb on + strand, within IAI46_11050at 2334.477 kb on + strand, within IAI46_11050at 2334.477 kb on + strand, within IAI46_11050at 2334.520 kb on + strand, within IAI46_11050at 2334.538 kb on + strand, within IAI46_11050at 2334.617 kb on + strand, within IAI46_11050at 2334.617 kb on + strand, within IAI46_11050at 2334.739 kb on + strand, within IAI46_11050at 2334.739 kb on + strand, within IAI46_11050at 2334.739 kb on + strand, within IAI46_11050at 2334.740 kb on - strand, within IAI46_11050at 2334.759 kb on + strand, within IAI46_11050at 2334.812 kb on - strandat 2334.827 kb on - strandat 2334.912 kb on + strandat 2334.913 kb on - strandat 2334.917 kb on + strandat 2335.014 kb on - strand, within IAI46_11055at 2335.040 kb on + strand, within IAI46_11055at 2335.364 kb on + strand, within IAI46_11055at 2335.534 kb on + strand, within IAI46_11055at 2335.535 kb on - strand, within IAI46_11055at 2335.538 kb on - strand, within IAI46_11055

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,334,382 - +0.1
2,334,382 - -0.4
2,334,397 - -0.9
2,334,435 + IAI46_11050 0.11 +0.8
2,334,477 + IAI46_11050 0.20 +0.5
2,334,477 + IAI46_11050 0.20 +0.3
2,334,520 + IAI46_11050 0.29 -0.0
2,334,538 + IAI46_11050 0.33 +0.6
2,334,617 + IAI46_11050 0.50 +1.1
2,334,617 + IAI46_11050 0.50 -0.2
2,334,739 + IAI46_11050 0.76 +1.1
2,334,739 + IAI46_11050 0.76 -0.4
2,334,739 + IAI46_11050 0.76 +0.4
2,334,740 - IAI46_11050 0.76 +0.4
2,334,759 + IAI46_11050 0.80 -2.1
2,334,812 - +0.5
2,334,827 - -0.0
2,334,912 + -1.6
2,334,913 - -0.4
2,334,917 + +0.1
2,335,014 - IAI46_11055 0.11 +0.5
2,335,040 + IAI46_11055 0.13 +0.6
2,335,364 + IAI46_11055 0.45 -0.6
2,335,534 + IAI46_11055 0.62 -1.3
2,335,535 - IAI46_11055 0.62 +0.3
2,335,538 - IAI46_11055 0.62 +0.8

Or see this region's nucleotide sequence