Strain Fitness in Serratia liquefaciens MT49 around IAI46_10395

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10390 and IAI46_10395 are separated by 5 nucleotidesIAI46_10395 and IAI46_10400 are separated by 320 nucleotides IAI46_10390: IAI46_10390 - two-component system sensor histidine kinase PhoQ, at 2,196,100 to 2,197,557 _10390 IAI46_10395: IAI46_10395 - two-component system response regulator PhoP, at 2,197,563 to 2,198,234 _10395 IAI46_10400: IAI46_10400 - cytochrome c, at 2,198,555 to 2,199,835 _10400 Position (kb) 2197 2198 2199Strain fitness (log2 ratio) -2 -1 0 1at 2196.602 kb on + strand, within IAI46_10390at 2196.603 kb on - strand, within IAI46_10390at 2196.679 kb on - strand, within IAI46_10390at 2196.688 kb on + strand, within IAI46_10390at 2196.688 kb on + strand, within IAI46_10390at 2196.689 kb on - strand, within IAI46_10390at 2196.810 kb on + strand, within IAI46_10390at 2196.978 kb on - strand, within IAI46_10390at 2196.995 kb on - strand, within IAI46_10390at 2197.076 kb on + strand, within IAI46_10390at 2197.077 kb on - strand, within IAI46_10390at 2197.127 kb on + strand, within IAI46_10390at 2197.469 kb on + strandat 2197.470 kb on - strandat 2197.851 kb on + strand, within IAI46_10395at 2197.902 kb on - strand, within IAI46_10395at 2198.199 kb on + strandat 2198.282 kb on + strandat 2198.329 kb on + strandat 2198.330 kb on - strandat 2198.330 kb on - strandat 2198.330 kb on - strandat 2198.330 kb on - strandat 2198.356 kb on + strandat 2198.357 kb on - strandat 2198.362 kb on - strandat 2198.362 kb on - strandat 2198.362 kb on - strandat 2198.365 kb on + strandat 2198.365 kb on + strandat 2198.366 kb on - strandat 2198.366 kb on - strandat 2198.366 kb on - strandat 2198.411 kb on - strandat 2198.424 kb on - strandat 2198.427 kb on + strandat 2198.759 kb on - strand, within IAI46_10400at 2198.828 kb on - strand, within IAI46_10400at 2198.903 kb on + strand, within IAI46_10400at 2199.005 kb on + strand, within IAI46_10400at 2199.005 kb on + strand, within IAI46_10400at 2199.005 kb on + strand, within IAI46_10400at 2199.005 kb on + strand, within IAI46_10400at 2199.005 kb on + strand, within IAI46_10400at 2199.006 kb on - strand, within IAI46_10400at 2199.025 kb on - strand, within IAI46_10400

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,196,602 + IAI46_10390 0.34 +1.1
2,196,603 - IAI46_10390 0.34 +0.1
2,196,679 - IAI46_10390 0.40 +0.6
2,196,688 + IAI46_10390 0.40 -0.8
2,196,688 + IAI46_10390 0.40 +1.4
2,196,689 - IAI46_10390 0.40 +0.8
2,196,810 + IAI46_10390 0.49 +1.0
2,196,978 - IAI46_10390 0.60 -1.3
2,196,995 - IAI46_10390 0.61 +0.0
2,197,076 + IAI46_10390 0.67 -1.5
2,197,077 - IAI46_10390 0.67 +0.9
2,197,127 + IAI46_10390 0.70 -1.8
2,197,469 + +0.9
2,197,470 - +0.1
2,197,851 + IAI46_10395 0.43 +0.5
2,197,902 - IAI46_10395 0.50 -0.1
2,198,199 + -0.1
2,198,282 + +1.2
2,198,329 + +0.9
2,198,330 - +0.5
2,198,330 - +0.4
2,198,330 - +0.1
2,198,330 - -0.9
2,198,356 + +0.7
2,198,357 - -0.0
2,198,362 - +0.3
2,198,362 - -0.9
2,198,362 - -0.2
2,198,365 + +0.8
2,198,365 + -0.3
2,198,366 - +0.2
2,198,366 - -0.2
2,198,366 - +0.5
2,198,411 - +0.9
2,198,424 - +1.0
2,198,427 + -0.0
2,198,759 - IAI46_10400 0.16 +0.4
2,198,828 - IAI46_10400 0.21 +0.3
2,198,903 + IAI46_10400 0.27 +0.6
2,199,005 + IAI46_10400 0.35 -0.2
2,199,005 + IAI46_10400 0.35 +0.6
2,199,005 + IAI46_10400 0.35 -0.4
2,199,005 + IAI46_10400 0.35 -0.3
2,199,005 + IAI46_10400 0.35 -0.4
2,199,006 - IAI46_10400 0.35 -0.2
2,199,025 - IAI46_10400 0.37 -1.4

Or see this region's nucleotide sequence