Strain Fitness in Serratia liquefaciens MT49 around IAI46_10385

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10380 and IAI46_10385 are separated by 50 nucleotidesIAI46_10385 and IAI46_10390 are separated by 84 nucleotides IAI46_10380: IAI46_10380 - malate/lactate/ureidoglycolate dehydrogenase, at 2,193,752 to 2,194,843 _10380 IAI46_10385: IAI46_10385 - cupin domain-containing protein, at 2,194,894 to 2,196,015 _10385 IAI46_10390: IAI46_10390 - two-component system sensor histidine kinase PhoQ, at 2,196,100 to 2,197,557 _10390 Position (kb) 2194 2195 2196 2197Strain fitness (log2 ratio) -1 0 1at 2193.920 kb on + strand, within IAI46_10380at 2193.921 kb on - strand, within IAI46_10380at 2193.922 kb on + strand, within IAI46_10380at 2193.922 kb on + strand, within IAI46_10380at 2193.923 kb on - strand, within IAI46_10380at 2193.923 kb on - strand, within IAI46_10380at 2193.923 kb on - strand, within IAI46_10380at 2193.923 kb on - strand, within IAI46_10380at 2194.059 kb on + strand, within IAI46_10380at 2194.162 kb on + strand, within IAI46_10380at 2194.168 kb on + strand, within IAI46_10380at 2194.321 kb on + strand, within IAI46_10380at 2194.337 kb on + strand, within IAI46_10380at 2194.457 kb on - strand, within IAI46_10380at 2194.463 kb on + strand, within IAI46_10380at 2194.520 kb on - strand, within IAI46_10380at 2195.367 kb on - strand, within IAI46_10385at 2195.475 kb on + strand, within IAI46_10385at 2195.477 kb on + strand, within IAI46_10385at 2195.478 kb on - strand, within IAI46_10385at 2195.630 kb on + strand, within IAI46_10385at 2195.631 kb on - strand, within IAI46_10385at 2195.969 kb on + strandat 2195.970 kb on - strandat 2195.970 kb on - strandat 2196.008 kb on + strandat 2196.021 kb on - strandat 2196.252 kb on + strand, within IAI46_10390at 2196.253 kb on - strand, within IAI46_10390at 2196.331 kb on - strand, within IAI46_10390at 2196.388 kb on - strand, within IAI46_10390at 2196.388 kb on - strand, within IAI46_10390at 2196.497 kb on + strand, within IAI46_10390at 2196.515 kb on - strand, within IAI46_10390at 2196.515 kb on - strand, within IAI46_10390at 2196.602 kb on + strand, within IAI46_10390at 2196.603 kb on - strand, within IAI46_10390at 2196.679 kb on - strand, within IAI46_10390at 2196.688 kb on + strand, within IAI46_10390at 2196.688 kb on + strand, within IAI46_10390at 2196.689 kb on - strand, within IAI46_10390at 2196.810 kb on + strand, within IAI46_10390at 2196.978 kb on - strand, within IAI46_10390at 2196.995 kb on - strand, within IAI46_10390

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,193,920 + IAI46_10380 0.15 -0.8
2,193,921 - IAI46_10380 0.15 +0.2
2,193,922 + IAI46_10380 0.16 +0.2
2,193,922 + IAI46_10380 0.16 -0.3
2,193,923 - IAI46_10380 0.16 +0.2
2,193,923 - IAI46_10380 0.16 -0.3
2,193,923 - IAI46_10380 0.16 +0.4
2,193,923 - IAI46_10380 0.16 +0.2
2,194,059 + IAI46_10380 0.28 -0.3
2,194,162 + IAI46_10380 0.38 +1.4
2,194,168 + IAI46_10380 0.38 -0.7
2,194,321 + IAI46_10380 0.52 +0.7
2,194,337 + IAI46_10380 0.54 -1.0
2,194,457 - IAI46_10380 0.65 +0.1
2,194,463 + IAI46_10380 0.65 +0.6
2,194,520 - IAI46_10380 0.70 +1.4
2,195,367 - IAI46_10385 0.42 +1.0
2,195,475 + IAI46_10385 0.52 -0.1
2,195,477 + IAI46_10385 0.52 -1.1
2,195,478 - IAI46_10385 0.52 -0.8
2,195,630 + IAI46_10385 0.66 -0.1
2,195,631 - IAI46_10385 0.66 +0.1
2,195,969 + +0.1
2,195,970 - -0.9
2,195,970 - -0.1
2,196,008 + -0.1
2,196,021 - -0.3
2,196,252 + IAI46_10390 0.10 -1.5
2,196,253 - IAI46_10390 0.10 +0.2
2,196,331 - IAI46_10390 0.16 +0.0
2,196,388 - IAI46_10390 0.20 +1.0
2,196,388 - IAI46_10390 0.20 +0.4
2,196,497 + IAI46_10390 0.27 -0.0
2,196,515 - IAI46_10390 0.28 +0.0
2,196,515 - IAI46_10390 0.28 -0.8
2,196,602 + IAI46_10390 0.34 +1.1
2,196,603 - IAI46_10390 0.34 +0.1
2,196,679 - IAI46_10390 0.40 +0.6
2,196,688 + IAI46_10390 0.40 -0.8
2,196,688 + IAI46_10390 0.40 +1.4
2,196,689 - IAI46_10390 0.40 +0.8
2,196,810 + IAI46_10390 0.49 +1.0
2,196,978 - IAI46_10390 0.60 -1.3
2,196,995 - IAI46_10390 0.61 +0.0

Or see this region's nucleotide sequence