Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_10380 and IAI46_10385 are separated by 50 nucleotides IAI46_10385 and IAI46_10390 are separated by 84 nucleotides
IAI46_10380: IAI46_10380 - malate/lactate/ureidoglycolate dehydrogenase, at 2,193,752 to 2,194,843
_10380
IAI46_10385: IAI46_10385 - cupin domain-containing protein, at 2,194,894 to 2,196,015
_10385
IAI46_10390: IAI46_10390 - two-component system sensor histidine kinase PhoQ, at 2,196,100 to 2,197,557
_10390
Position (kb)
2194
2195
2196
2197 Strain fitness (log2 ratio)
-1
0
1 at 2193.920 kb on + strand, within IAI46_10380 at 2193.921 kb on - strand, within IAI46_10380 at 2193.922 kb on + strand, within IAI46_10380 at 2193.922 kb on + strand, within IAI46_10380 at 2193.923 kb on - strand, within IAI46_10380 at 2193.923 kb on - strand, within IAI46_10380 at 2193.923 kb on - strand, within IAI46_10380 at 2193.923 kb on - strand, within IAI46_10380 at 2194.059 kb on + strand, within IAI46_10380 at 2194.162 kb on + strand, within IAI46_10380 at 2194.168 kb on + strand, within IAI46_10380 at 2194.321 kb on + strand, within IAI46_10380 at 2194.337 kb on + strand, within IAI46_10380 at 2194.457 kb on - strand, within IAI46_10380 at 2194.463 kb on + strand, within IAI46_10380 at 2194.520 kb on - strand, within IAI46_10380 at 2195.367 kb on - strand, within IAI46_10385 at 2195.475 kb on + strand, within IAI46_10385 at 2195.477 kb on + strand, within IAI46_10385 at 2195.478 kb on - strand, within IAI46_10385 at 2195.630 kb on + strand, within IAI46_10385 at 2195.631 kb on - strand, within IAI46_10385 at 2195.969 kb on + strand at 2195.970 kb on - strand at 2195.970 kb on - strand at 2196.008 kb on + strand at 2196.021 kb on - strand at 2196.252 kb on + strand, within IAI46_10390 at 2196.253 kb on - strand, within IAI46_10390 at 2196.331 kb on - strand, within IAI46_10390 at 2196.388 kb on - strand, within IAI46_10390 at 2196.388 kb on - strand, within IAI46_10390 at 2196.497 kb on + strand, within IAI46_10390 at 2196.515 kb on - strand, within IAI46_10390 at 2196.515 kb on - strand, within IAI46_10390 at 2196.602 kb on + strand, within IAI46_10390 at 2196.603 kb on - strand, within IAI46_10390 at 2196.679 kb on - strand, within IAI46_10390 at 2196.688 kb on + strand, within IAI46_10390 at 2196.688 kb on + strand, within IAI46_10390 at 2196.689 kb on - strand, within IAI46_10390 at 2196.810 kb on + strand, within IAI46_10390 at 2196.978 kb on - strand, within IAI46_10390 at 2196.995 kb on - strand, within IAI46_10390
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,193,920 + IAI46_10380 0.15 -0.8 2,193,921 - IAI46_10380 0.15 +0.2 2,193,922 + IAI46_10380 0.16 +0.2 2,193,922 + IAI46_10380 0.16 -0.3 2,193,923 - IAI46_10380 0.16 +0.2 2,193,923 - IAI46_10380 0.16 -0.3 2,193,923 - IAI46_10380 0.16 +0.4 2,193,923 - IAI46_10380 0.16 +0.2 2,194,059 + IAI46_10380 0.28 -0.3 2,194,162 + IAI46_10380 0.38 +1.4 2,194,168 + IAI46_10380 0.38 -0.7 2,194,321 + IAI46_10380 0.52 +0.7 2,194,337 + IAI46_10380 0.54 -1.0 2,194,457 - IAI46_10380 0.65 +0.1 2,194,463 + IAI46_10380 0.65 +0.6 2,194,520 - IAI46_10380 0.70 +1.4 2,195,367 - IAI46_10385 0.42 +1.0 2,195,475 + IAI46_10385 0.52 -0.1 2,195,477 + IAI46_10385 0.52 -1.1 2,195,478 - IAI46_10385 0.52 -0.8 2,195,630 + IAI46_10385 0.66 -0.1 2,195,631 - IAI46_10385 0.66 +0.1 2,195,969 + +0.1 2,195,970 - -0.9 2,195,970 - -0.1 2,196,008 + -0.1 2,196,021 - -0.3 2,196,252 + IAI46_10390 0.10 -1.5 2,196,253 - IAI46_10390 0.10 +0.2 2,196,331 - IAI46_10390 0.16 +0.0 2,196,388 - IAI46_10390 0.20 +1.0 2,196,388 - IAI46_10390 0.20 +0.4 2,196,497 + IAI46_10390 0.27 -0.0 2,196,515 - IAI46_10390 0.28 +0.0 2,196,515 - IAI46_10390 0.28 -0.8 2,196,602 + IAI46_10390 0.34 +1.1 2,196,603 - IAI46_10390 0.34 +0.1 2,196,679 - IAI46_10390 0.40 +0.6 2,196,688 + IAI46_10390 0.40 -0.8 2,196,688 + IAI46_10390 0.40 +1.4 2,196,689 - IAI46_10390 0.40 +0.8 2,196,810 + IAI46_10390 0.49 +1.0 2,196,978 - IAI46_10390 0.60 -1.3 2,196,995 - IAI46_10390 0.61 +0.0
Or see this region's nucleotide sequence