Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_09990 and IAI46_09995 are separated by 30 nucleotides IAI46_09995 and IAI46_10000 are separated by 372 nucleotides IAI46_10000 and IAI46_10005 are separated by 315 nucleotides IAI46_10005 and IAI46_10010 are separated by 3 nucleotides
IAI46_09990: IAI46_09990 - prolyl aminopeptidase, at 2,112,322 to 2,113,275
_09990
IAI46_09995: IAI46_09995 - DNA polymerase III subunit theta, at 2,113,306 to 2,113,536
_09995
IAI46_10000: IAI46_10000 - non-heme ferritin, at 2,113,909 to 2,114,427
_10000
IAI46_10005: IAI46_10005 - CopC domain-containing protein YobA, at 2,114,743 to 2,115,126
_10005
IAI46_10010: IAI46_10010 - copper homeostasis membrane protein CopD, at 2,115,130 to 2,116,011
_10010
Position (kb)
2113
2114
2115 Strain fitness (log2 ratio)
-2
-1
0
1 at 2113.030 kb on - strand, within IAI46_09990 at 2113.092 kb on + strand, within IAI46_09990 at 2113.120 kb on + strand, within IAI46_09990 at 2113.188 kb on + strand at 2113.188 kb on + strand at 2113.188 kb on + strand at 2113.189 kb on - strand at 2113.241 kb on + strand at 2113.341 kb on - strand, within IAI46_09995 at 2113.445 kb on + strand, within IAI46_09995 at 2113.529 kb on + strand at 2113.530 kb on - strand at 2113.539 kb on + strand at 2113.548 kb on + strand at 2113.580 kb on - strand at 2113.664 kb on - strand at 2113.864 kb on - strand at 2113.964 kb on - strand, within IAI46_10000 at 2113.979 kb on - strand, within IAI46_10000 at 2114.179 kb on + strand, within IAI46_10000 at 2114.211 kb on + strand, within IAI46_10000 at 2114.212 kb on - strand, within IAI46_10000 at 2114.248 kb on + strand, within IAI46_10000 at 2114.248 kb on + strand, within IAI46_10000 at 2114.249 kb on - strand, within IAI46_10000 at 2114.276 kb on - strand, within IAI46_10000 at 2114.276 kb on - strand, within IAI46_10000 at 2114.276 kb on - strand, within IAI46_10000 at 2114.374 kb on - strand, within IAI46_10000 at 2114.509 kb on + strand at 2114.510 kb on - strand at 2114.555 kb on + strand at 2114.621 kb on - strand at 2114.678 kb on + strand at 2114.678 kb on + strand at 2114.722 kb on - strand at 2114.738 kb on + strand at 2115.053 kb on - strand, within IAI46_10005 at 2115.106 kb on + strand at 2115.107 kb on - strand at 2115.207 kb on - strand at 2115.218 kb on + strand at 2115.358 kb on - strand, within IAI46_10010
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 2,113,030 - IAI46_09990 0.74 +0.1 2,113,092 + IAI46_09990 0.81 +0.1 2,113,120 + IAI46_09990 0.84 +1.5 2,113,188 + +0.1 2,113,188 + -0.2 2,113,188 + +0.3 2,113,189 - +0.9 2,113,241 + +0.5 2,113,341 - IAI46_09995 0.15 -0.1 2,113,445 + IAI46_09995 0.60 +0.8 2,113,529 + +0.2 2,113,530 - +1.6 2,113,539 + +0.8 2,113,548 + -0.6 2,113,580 - -0.5 2,113,664 - +0.6 2,113,864 - +0.1 2,113,964 - IAI46_10000 0.11 -1.9 2,113,979 - IAI46_10000 0.13 +0.4 2,114,179 + IAI46_10000 0.52 +0.1 2,114,211 + IAI46_10000 0.58 +1.6 2,114,212 - IAI46_10000 0.58 +0.2 2,114,248 + IAI46_10000 0.65 +0.6 2,114,248 + IAI46_10000 0.65 +0.3 2,114,249 - IAI46_10000 0.66 +0.6 2,114,276 - IAI46_10000 0.71 +0.4 2,114,276 - IAI46_10000 0.71 -0.1 2,114,276 - IAI46_10000 0.71 -0.2 2,114,374 - IAI46_10000 0.90 +0.5 2,114,509 + +0.0 2,114,510 - +0.2 2,114,555 + +1.1 2,114,621 - -0.1 2,114,678 + -0.3 2,114,678 + -0.3 2,114,722 - -0.4 2,114,738 + +0.2 2,115,053 - IAI46_10005 0.81 +0.4 2,115,106 + +0.2 2,115,107 - -0.0 2,115,207 - +0.5 2,115,218 + -0.1 2,115,358 - IAI46_10010 0.26 +0.5
Or see this region's nucleotide sequence