Strain Fitness in Serratia liquefaciens MT49 around IAI46_10000

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09990 and IAI46_09995 are separated by 30 nucleotidesIAI46_09995 and IAI46_10000 are separated by 372 nucleotidesIAI46_10000 and IAI46_10005 are separated by 315 nucleotidesIAI46_10005 and IAI46_10010 are separated by 3 nucleotides IAI46_09990: IAI46_09990 - prolyl aminopeptidase, at 2,112,322 to 2,113,275 _09990 IAI46_09995: IAI46_09995 - DNA polymerase III subunit theta, at 2,113,306 to 2,113,536 _09995 IAI46_10000: IAI46_10000 - non-heme ferritin, at 2,113,909 to 2,114,427 _10000 IAI46_10005: IAI46_10005 - CopC domain-containing protein YobA, at 2,114,743 to 2,115,126 _10005 IAI46_10010: IAI46_10010 - copper homeostasis membrane protein CopD, at 2,115,130 to 2,116,011 _10010 Position (kb) 2113 2114 2115Strain fitness (log2 ratio) -2 -1 0 1at 2113.030 kb on - strand, within IAI46_09990at 2113.092 kb on + strand, within IAI46_09990at 2113.120 kb on + strand, within IAI46_09990at 2113.188 kb on + strandat 2113.188 kb on + strandat 2113.188 kb on + strandat 2113.189 kb on - strandat 2113.241 kb on + strandat 2113.341 kb on - strand, within IAI46_09995at 2113.445 kb on + strand, within IAI46_09995at 2113.529 kb on + strandat 2113.530 kb on - strandat 2113.539 kb on + strandat 2113.548 kb on + strandat 2113.580 kb on - strandat 2113.664 kb on - strandat 2113.864 kb on - strandat 2113.964 kb on - strand, within IAI46_10000at 2113.979 kb on - strand, within IAI46_10000at 2114.179 kb on + strand, within IAI46_10000at 2114.211 kb on + strand, within IAI46_10000at 2114.212 kb on - strand, within IAI46_10000at 2114.248 kb on + strand, within IAI46_10000at 2114.248 kb on + strand, within IAI46_10000at 2114.249 kb on - strand, within IAI46_10000at 2114.276 kb on - strand, within IAI46_10000at 2114.276 kb on - strand, within IAI46_10000at 2114.276 kb on - strand, within IAI46_10000at 2114.374 kb on - strand, within IAI46_10000at 2114.509 kb on + strandat 2114.510 kb on - strandat 2114.555 kb on + strandat 2114.621 kb on - strandat 2114.678 kb on + strandat 2114.678 kb on + strandat 2114.722 kb on - strandat 2114.738 kb on + strandat 2115.053 kb on - strand, within IAI46_10005at 2115.106 kb on + strandat 2115.107 kb on - strandat 2115.207 kb on - strandat 2115.218 kb on + strandat 2115.358 kb on - strand, within IAI46_10010

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,113,030 - IAI46_09990 0.74 +0.1
2,113,092 + IAI46_09990 0.81 +0.1
2,113,120 + IAI46_09990 0.84 +1.5
2,113,188 + +0.1
2,113,188 + -0.2
2,113,188 + +0.3
2,113,189 - +0.9
2,113,241 + +0.5
2,113,341 - IAI46_09995 0.15 -0.1
2,113,445 + IAI46_09995 0.60 +0.8
2,113,529 + +0.2
2,113,530 - +1.6
2,113,539 + +0.8
2,113,548 + -0.6
2,113,580 - -0.5
2,113,664 - +0.6
2,113,864 - +0.1
2,113,964 - IAI46_10000 0.11 -1.9
2,113,979 - IAI46_10000 0.13 +0.4
2,114,179 + IAI46_10000 0.52 +0.1
2,114,211 + IAI46_10000 0.58 +1.6
2,114,212 - IAI46_10000 0.58 +0.2
2,114,248 + IAI46_10000 0.65 +0.6
2,114,248 + IAI46_10000 0.65 +0.3
2,114,249 - IAI46_10000 0.66 +0.6
2,114,276 - IAI46_10000 0.71 +0.4
2,114,276 - IAI46_10000 0.71 -0.1
2,114,276 - IAI46_10000 0.71 -0.2
2,114,374 - IAI46_10000 0.90 +0.5
2,114,509 + +0.0
2,114,510 - +0.2
2,114,555 + +1.1
2,114,621 - -0.1
2,114,678 + -0.3
2,114,678 + -0.3
2,114,722 - -0.4
2,114,738 + +0.2
2,115,053 - IAI46_10005 0.81 +0.4
2,115,106 + +0.2
2,115,107 - -0.0
2,115,207 - +0.5
2,115,218 + -0.1
2,115,358 - IAI46_10010 0.26 +0.5

Or see this region's nucleotide sequence