Strain Fitness in Serratia liquefaciens MT49 around IAI46_09825

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09820 and IAI46_09825 are separated by 14 nucleotidesIAI46_09825 and IAI46_09830 are separated by 338 nucleotides IAI46_09820: IAI46_09820 - DNA polymerase III subunit delta', at 2,078,796 to 2,079,803 _09820 IAI46_09825: IAI46_09825 - metal-dependent hydrolase, at 2,079,818 to 2,080,594 _09825 IAI46_09830: IAI46_09830 - PTS glucose transporter subunit IIBC, at 2,080,933 to 2,082,366 _09830 Position (kb) 2079 2080 2081Strain fitness (log2 ratio) -1 0 1at 2079.814 kb on + strandat 2079.814 kb on + strandat 2079.815 kb on - strandat 2079.825 kb on + strandat 2079.828 kb on + strandat 2079.829 kb on - strandat 2080.047 kb on - strand, within IAI46_09825at 2080.113 kb on - strand, within IAI46_09825at 2080.335 kb on - strand, within IAI46_09825at 2080.335 kb on - strand, within IAI46_09825at 2080.485 kb on - strand, within IAI46_09825at 2080.505 kb on + strand, within IAI46_09825at 2080.505 kb on + strand, within IAI46_09825at 2080.575 kb on + strandat 2080.575 kb on + strandat 2080.576 kb on - strandat 2080.609 kb on + strandat 2080.610 kb on - strandat 2080.610 kb on - strandat 2080.617 kb on + strandat 2080.618 kb on - strandat 2080.618 kb on - strandat 2080.618 kb on - strandat 2080.899 kb on - strandat 2080.909 kb on + strandat 2080.909 kb on + strandat 2080.933 kb on - strandat 2080.971 kb on + strandat 2081.298 kb on + strand, within IAI46_09830at 2081.322 kb on + strand, within IAI46_09830at 2081.430 kb on - strand, within IAI46_09830at 2081.460 kb on + strand, within IAI46_09830at 2081.494 kb on + strand, within IAI46_09830at 2081.524 kb on + strand, within IAI46_09830at 2081.580 kb on - strand, within IAI46_09830

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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2,079,814 + +0.3
2,079,814 + -0.3
2,079,815 - +1.1
2,079,825 + +0.3
2,079,828 + -0.2
2,079,829 - +0.8
2,080,047 - IAI46_09825 0.29 +0.0
2,080,113 - IAI46_09825 0.38 -0.0
2,080,335 - IAI46_09825 0.67 -1.0
2,080,335 - IAI46_09825 0.67 +1.6
2,080,485 - IAI46_09825 0.86 -0.5
2,080,505 + IAI46_09825 0.88 +0.2
2,080,505 + IAI46_09825 0.88 -0.6
2,080,575 + +1.4
2,080,575 + +0.5
2,080,576 - -0.7
2,080,609 + +0.5
2,080,610 - -0.4
2,080,610 - +0.9
2,080,617 + +0.8
2,080,618 - -0.4
2,080,618 - +1.0
2,080,618 - +0.3
2,080,899 - +1.0
2,080,909 + +0.0
2,080,909 + +0.9
2,080,933 - -0.1
2,080,971 + -0.9
2,081,298 + IAI46_09830 0.25 -0.4
2,081,322 + IAI46_09830 0.27 -0.6
2,081,430 - IAI46_09830 0.35 -1.1
2,081,460 + IAI46_09830 0.37 +0.1
2,081,494 + IAI46_09830 0.39 -0.4
2,081,524 + IAI46_09830 0.41 -0.0
2,081,580 - IAI46_09830 0.45 +0.1

Or see this region's nucleotide sequence