Strain Fitness in Serratia liquefaciens MT49 around IAI46_06420

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06410 and IAI46_06415 are separated by 213 nucleotidesIAI46_06415 and IAI46_06420 are separated by 196 nucleotidesIAI46_06420 and IAI46_06425 overlap by 7 nucleotides IAI46_06410: IAI46_06410 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 1,367,622 to 1,368,374 _06410 IAI46_06415: IAI46_06415 - phosphate-starvation-inducible protein PsiF, at 1,368,588 to 1,368,926 _06415 IAI46_06420: IAI46_06420 - galactose-1-epimerase, at 1,369,123 to 1,370,166 _06420 IAI46_06425: IAI46_06425 - galactokinase, at 1,370,160 to 1,371,311 _06425 Position (kb) 1369 1370 1371Strain fitness (log2 ratio) -2 -1 0 1 2at 1368.455 kb on - strandat 1368.467 kb on + strandat 1368.490 kb on - strandat 1368.617 kb on + strandat 1368.618 kb on - strandat 1368.753 kb on - strand, within IAI46_06415at 1368.753 kb on - strand, within IAI46_06415at 1368.797 kb on + strand, within IAI46_06415at 1368.798 kb on - strand, within IAI46_06415at 1368.888 kb on + strand, within IAI46_06415at 1368.888 kb on + strand, within IAI46_06415at 1368.926 kb on + strandat 1368.926 kb on + strandat 1368.926 kb on + strandat 1368.926 kb on + strandat 1368.927 kb on - strandat 1368.927 kb on - strandat 1368.927 kb on - strandat 1368.927 kb on - strandat 1368.927 kb on - strandat 1368.942 kb on + strandat 1368.943 kb on - strandat 1368.995 kb on + strandat 1368.996 kb on - strandat 1369.003 kb on + strandat 1369.014 kb on + strandat 1369.014 kb on + strandat 1369.014 kb on + strandat 1369.031 kb on + strandat 1369.080 kb on + strandat 1369.080 kb on + strandat 1369.080 kb on + strandat 1369.117 kb on - strandat 1369.128 kb on + strandat 1369.128 kb on + strandat 1369.128 kb on + strandat 1369.129 kb on - strandat 1369.161 kb on - strandat 1369.161 kb on - strandat 1369.256 kb on + strand, within IAI46_06420at 1369.256 kb on + strand, within IAI46_06420at 1369.265 kb on + strand, within IAI46_06420at 1369.266 kb on - strand, within IAI46_06420at 1369.301 kb on + strand, within IAI46_06420at 1369.302 kb on - strand, within IAI46_06420at 1369.314 kb on - strand, within IAI46_06420at 1369.410 kb on + strand, within IAI46_06420at 1369.417 kb on + strand, within IAI46_06420at 1369.437 kb on - strand, within IAI46_06420at 1369.437 kb on - strand, within IAI46_06420at 1369.530 kb on + strand, within IAI46_06420at 1369.531 kb on - strand, within IAI46_06420at 1369.571 kb on + strand, within IAI46_06420at 1369.637 kb on + strand, within IAI46_06420at 1369.724 kb on + strand, within IAI46_06420at 1369.724 kb on + strand, within IAI46_06420at 1369.788 kb on - strand, within IAI46_06420at 1369.837 kb on - strand, within IAI46_06420at 1369.953 kb on + strand, within IAI46_06420at 1369.964 kb on + strand, within IAI46_06420at 1369.964 kb on + strand, within IAI46_06420at 1370.044 kb on + strand, within IAI46_06420at 1370.045 kb on - strand, within IAI46_06420at 1370.197 kb on + strandat 1370.197 kb on + strandat 1370.198 kb on - strandat 1370.198 kb on - strandat 1370.245 kb on - strandat 1370.294 kb on + strand, within IAI46_06425at 1370.321 kb on + strand, within IAI46_06425at 1370.453 kb on + strand, within IAI46_06425at 1370.453 kb on + strand, within IAI46_06425at 1370.454 kb on - strand, within IAI46_06425at 1370.490 kb on - strand, within IAI46_06425at 1370.490 kb on - strand, within IAI46_06425at 1370.644 kb on + strand, within IAI46_06425at 1370.645 kb on - strand, within IAI46_06425at 1370.655 kb on + strand, within IAI46_06425at 1370.656 kb on - strand, within IAI46_06425at 1370.796 kb on - strand, within IAI46_06425at 1370.878 kb on + strand, within IAI46_06425at 1370.878 kb on + strand, within IAI46_06425at 1370.879 kb on - strand, within IAI46_06425at 1370.879 kb on - strand, within IAI46_06425at 1371.024 kb on + strand, within IAI46_06425at 1371.029 kb on - strand, within IAI46_06425

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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1,368,455 - +1.1
1,368,467 + +0.2
1,368,490 - +0.3
1,368,617 + +0.2
1,368,618 - -1.6
1,368,753 - IAI46_06415 0.49 +0.2
1,368,753 - IAI46_06415 0.49 +0.3
1,368,797 + IAI46_06415 0.62 +0.5
1,368,798 - IAI46_06415 0.62 -0.8
1,368,888 + IAI46_06415 0.88 -0.1
1,368,888 + IAI46_06415 0.88 +1.2
1,368,926 + +0.7
1,368,926 + +1.1
1,368,926 + -0.6
1,368,926 + -0.9
1,368,927 - -0.6
1,368,927 - -0.7
1,368,927 - +1.5
1,368,927 - -0.9
1,368,927 - +0.7
1,368,942 + -0.3
1,368,943 - -0.3
1,368,995 + +1.4
1,368,996 - -0.0
1,369,003 + -0.2
1,369,014 + +1.2
1,369,014 + +2.4
1,369,014 + +0.9
1,369,031 + +0.5
1,369,080 + -0.2
1,369,080 + -0.4
1,369,080 + +0.0
1,369,117 - +0.6
1,369,128 + +1.8
1,369,128 + +0.3
1,369,128 + -0.9
1,369,129 - -0.3
1,369,161 - -2.1
1,369,161 - +0.4
1,369,256 + IAI46_06420 0.13 +0.7
1,369,256 + IAI46_06420 0.13 +1.0
1,369,265 + IAI46_06420 0.14 +0.8
1,369,266 - IAI46_06420 0.14 +0.5
1,369,301 + IAI46_06420 0.17 -0.1
1,369,302 - IAI46_06420 0.17 +0.2
1,369,314 - IAI46_06420 0.18 -0.5
1,369,410 + IAI46_06420 0.27 +0.2
1,369,417 + IAI46_06420 0.28 +1.6
1,369,437 - IAI46_06420 0.30 +0.7
1,369,437 - IAI46_06420 0.30 +0.3
1,369,530 + IAI46_06420 0.39 +0.5
1,369,531 - IAI46_06420 0.39 +0.1
1,369,571 + IAI46_06420 0.43 -0.8
1,369,637 + IAI46_06420 0.49 +0.7
1,369,724 + IAI46_06420 0.58 +0.2
1,369,724 + IAI46_06420 0.58 +0.5
1,369,788 - IAI46_06420 0.64 +0.5
1,369,837 - IAI46_06420 0.68 -0.1
1,369,953 + IAI46_06420 0.80 +0.1
1,369,964 + IAI46_06420 0.81 +0.7
1,369,964 + IAI46_06420 0.81 +0.7
1,370,044 + IAI46_06420 0.88 +0.1
1,370,045 - IAI46_06420 0.88 -0.0
1,370,197 + -0.2
1,370,197 + +0.2
1,370,198 - +0.2
1,370,198 - +0.2
1,370,245 - +0.2
1,370,294 + IAI46_06425 0.12 +0.5
1,370,321 + IAI46_06425 0.14 +0.6
1,370,453 + IAI46_06425 0.25 -0.2
1,370,453 + IAI46_06425 0.25 +1.3
1,370,454 - IAI46_06425 0.26 -0.5
1,370,490 - IAI46_06425 0.29 +0.9
1,370,490 - IAI46_06425 0.29 +0.0
1,370,644 + IAI46_06425 0.42 -1.3
1,370,645 - IAI46_06425 0.42 -0.4
1,370,655 + IAI46_06425 0.43 -0.0
1,370,656 - IAI46_06425 0.43 +0.7
1,370,796 - IAI46_06425 0.55 +0.4
1,370,878 + IAI46_06425 0.62 -0.1
1,370,878 + IAI46_06425 0.62 -1.1
1,370,879 - IAI46_06425 0.62 +0.2
1,370,879 - IAI46_06425 0.62 -0.2
1,371,024 + IAI46_06425 0.75 +0.3
1,371,029 - IAI46_06425 0.75 +0.1

Or see this region's nucleotide sequence