Strain Fitness in Serratia liquefaciens MT49 around IAI46_04250

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04245 and IAI46_04250 are separated by 217 nucleotidesIAI46_04250 and IAI46_04255 are separated by 12 nucleotidesIAI46_04255 and IAI46_04260 overlap by 1 nucleotides IAI46_04245: IAI46_04245 - MurR/RpiR family transcriptional regulator, at 913,149 to 913,988 _04245 IAI46_04250: IAI46_04250 - transporter substrate-binding domain-containing protein, at 914,206 to 914,997 _04250 IAI46_04255: IAI46_04255 - amino acid ABC transporter permease, at 915,010 to 915,675 _04255 IAI46_04260: IAI46_04260 - amino acid ABC transporter permease, at 915,675 to 916,331 _04260 Position (kb) 914 915Strain fitness (log2 ratio) -3 -2 -1 0 1at 913.288 kb on + strand, within IAI46_04245at 913.299 kb on - strand, within IAI46_04245at 913.338 kb on + strand, within IAI46_04245at 913.397 kb on + strand, within IAI46_04245at 913.440 kb on + strand, within IAI46_04245at 913.440 kb on + strand, within IAI46_04245at 913.441 kb on - strand, within IAI46_04245at 913.441 kb on - strand, within IAI46_04245at 913.463 kb on + strand, within IAI46_04245at 913.463 kb on + strand, within IAI46_04245at 913.464 kb on - strand, within IAI46_04245at 913.464 kb on - strand, within IAI46_04245at 913.464 kb on - strand, within IAI46_04245at 913.482 kb on - strand, within IAI46_04245at 913.540 kb on + strand, within IAI46_04245at 913.603 kb on + strand, within IAI46_04245at 913.618 kb on + strand, within IAI46_04245at 913.688 kb on - strand, within IAI46_04245at 913.857 kb on + strand, within IAI46_04245at 913.858 kb on - strand, within IAI46_04245at 914.044 kb on + strandat 914.094 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.205 kb on + strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.206 kb on - strandat 914.288 kb on + strand, within IAI46_04250at 914.427 kb on + strand, within IAI46_04250at 914.428 kb on - strand, within IAI46_04250at 914.428 kb on - strand, within IAI46_04250at 914.428 kb on - strand, within IAI46_04250at 914.469 kb on + strand, within IAI46_04250at 914.471 kb on - strand, within IAI46_04250at 914.475 kb on - strand, within IAI46_04250at 914.475 kb on - strand, within IAI46_04250at 914.482 kb on - strand, within IAI46_04250at 914.710 kb on + strand, within IAI46_04250at 914.740 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.836 kb on - strand, within IAI46_04250at 914.836 kb on - strand, within IAI46_04250at 914.934 kb on + strandat 915.016 kb on + strandat 915.016 kb on + strandat 915.016 kb on + strandat 915.017 kb on - strandat 915.017 kb on - strandat 915.017 kb on - strandat 915.047 kb on - strandat 915.075 kb on - strandat 915.187 kb on + strand, within IAI46_04255at 915.187 kb on + strand, within IAI46_04255at 915.188 kb on - strand, within IAI46_04255at 915.306 kb on + strand, within IAI46_04255at 915.334 kb on - strand, within IAI46_04255at 915.335 kb on + strand, within IAI46_04255at 915.397 kb on - strand, within IAI46_04255at 915.452 kb on - strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.585 kb on - strand, within IAI46_04255at 915.585 kb on - strand, within IAI46_04255at 915.602 kb on - strand, within IAI46_04255at 915.962 kb on + strand, within IAI46_04260at 915.963 kb on - strand, within IAI46_04260at 915.983 kb on + strand, within IAI46_04260at 915.984 kb on - strand, within IAI46_04260

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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913,288 + IAI46_04245 0.17 +1.3
913,299 - IAI46_04245 0.18 -0.4
913,338 + IAI46_04245 0.23 +1.0
913,397 + IAI46_04245 0.30 +0.6
913,440 + IAI46_04245 0.35 +0.0
913,440 + IAI46_04245 0.35 +0.3
913,441 - IAI46_04245 0.35 -0.0
913,441 - IAI46_04245 0.35 -0.6
913,463 + IAI46_04245 0.37 +0.8
913,463 + IAI46_04245 0.37 +0.2
913,464 - IAI46_04245 0.38 -0.2
913,464 - IAI46_04245 0.38 -0.8
913,464 - IAI46_04245 0.38 +0.8
913,482 - IAI46_04245 0.40 +0.1
913,540 + IAI46_04245 0.47 -0.4
913,603 + IAI46_04245 0.54 +0.4
913,618 + IAI46_04245 0.56 +0.5
913,688 - IAI46_04245 0.64 -0.1
913,857 + IAI46_04245 0.84 +0.1
913,858 - IAI46_04245 0.84 +0.6
914,044 + -0.8
914,094 + +0.2
914,205 + -0.0
914,205 + +0.5
914,205 + +0.2
914,205 + +0.4
914,205 + -0.1
914,206 - +0.1
914,206 - +0.7
914,206 - +0.7
914,206 - -1.7
914,206 - -1.0
914,288 + IAI46_04250 0.10 +1.0
914,427 + IAI46_04250 0.28 -0.2
914,428 - IAI46_04250 0.28 +1.2
914,428 - IAI46_04250 0.28 +0.3
914,428 - IAI46_04250 0.28 +0.3
914,469 + IAI46_04250 0.33 +0.9
914,471 - IAI46_04250 0.33 +0.6
914,475 - IAI46_04250 0.34 +0.2
914,475 - IAI46_04250 0.34 -0.1
914,482 - IAI46_04250 0.35 +0.3
914,710 + IAI46_04250 0.64 +0.4
914,740 + IAI46_04250 0.67 +0.1
914,761 + IAI46_04250 0.70 -0.7
914,761 + IAI46_04250 0.70 -0.2
914,761 + IAI46_04250 0.70 -1.1
914,761 + IAI46_04250 0.70 +0.1
914,762 - IAI46_04250 0.70 +0.4
914,762 - IAI46_04250 0.70 +0.7
914,762 - IAI46_04250 0.70 -0.4
914,762 - IAI46_04250 0.70 -0.1
914,762 - IAI46_04250 0.70 +0.1
914,835 + IAI46_04250 0.79 +0.3
914,835 + IAI46_04250 0.79 -0.3
914,835 + IAI46_04250 0.79 +0.3
914,836 - IAI46_04250 0.80 +0.4
914,836 - IAI46_04250 0.80 +0.4
914,934 + +0.8
915,016 + -0.5
915,016 + +1.1
915,016 + +0.1
915,017 - +0.5
915,017 - +0.2
915,017 - +0.6
915,047 - +0.2
915,075 - -0.1
915,187 + IAI46_04255 0.27 +0.8
915,187 + IAI46_04255 0.27 -0.1
915,188 - IAI46_04255 0.27 +0.9
915,306 + IAI46_04255 0.44 +0.3
915,334 - IAI46_04255 0.49 -0.4
915,335 + IAI46_04255 0.49 +0.5
915,397 - IAI46_04255 0.58 -0.5
915,452 - IAI46_04255 0.66 +0.8
915,580 + IAI46_04255 0.86 +1.4
915,580 + IAI46_04255 0.86 -0.4
915,580 + IAI46_04255 0.86 +0.3
915,580 + IAI46_04255 0.86 +0.0
915,585 - IAI46_04255 0.86 -0.1
915,585 - IAI46_04255 0.86 -0.8
915,602 - IAI46_04255 0.89 -0.5
915,962 + IAI46_04260 0.44 -1.1
915,963 - IAI46_04260 0.44 -2.8
915,983 + IAI46_04260 0.47 +1.6
915,984 - IAI46_04260 0.47 -0.3

Or see this region's nucleotide sequence