Strain Fitness in Serratia liquefaciens MT49 around IAI46_03720

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03710 and IAI46_03715 are separated by 9 nucleotidesIAI46_03715 and IAI46_03720 are separated by 11 nucleotidesIAI46_03720 and IAI46_03725 are separated by 1 nucleotidesIAI46_03725 and IAI46_03730 are separated by 85 nucleotides IAI46_03710: IAI46_03710 - uroporphyrinogen-III C-methyltransferase, at 809,297 to 810,727 _03710 IAI46_03715: IAI46_03715 - sulfate adenylyltransferase subunit CysD, at 810,737 to 811,645 _03715 IAI46_03720: IAI46_03720 - sulfate adenylyltransferase subunit CysN, at 811,657 to 813,084 _03720 IAI46_03725: IAI46_03725 - adenylyl-sulfate kinase, at 813,086 to 813,715 _03725 IAI46_03730: IAI46_03730 - DUF3561 family protein, at 813,801 to 814,118 _03730 Position (kb) 811 812 813 814Strain fitness (log2 ratio) -2 -1 0 1 2at 810.725 kb on + strandat 810.726 kb on - strandat 810.737 kb on - strandat 810.784 kb on + strandat 810.784 kb on + strandat 810.784 kb on + strandat 810.785 kb on - strandat 810.785 kb on - strandat 810.790 kb on + strandat 810.790 kb on + strandat 810.790 kb on + strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.791 kb on - strandat 810.836 kb on + strand, within IAI46_03715at 810.837 kb on - strand, within IAI46_03715at 810.837 kb on - strand, within IAI46_03715at 810.881 kb on - strand, within IAI46_03715at 811.066 kb on + strand, within IAI46_03715at 811.066 kb on + strand, within IAI46_03715at 811.112 kb on + strand, within IAI46_03715at 811.177 kb on + strand, within IAI46_03715at 811.177 kb on + strand, within IAI46_03715at 811.178 kb on - strand, within IAI46_03715at 811.178 kb on - strand, within IAI46_03715at 811.181 kb on + strand, within IAI46_03715at 811.181 kb on + strand, within IAI46_03715at 811.247 kb on + strand, within IAI46_03715at 811.247 kb on + strand, within IAI46_03715at 811.248 kb on - strand, within IAI46_03715at 811.316 kb on - strand, within IAI46_03715at 811.361 kb on + strand, within IAI46_03715at 811.362 kb on - strand, within IAI46_03715at 811.362 kb on - strand, within IAI46_03715at 811.386 kb on + strand, within IAI46_03715at 811.387 kb on - strand, within IAI46_03715at 811.426 kb on + strand, within IAI46_03715at 811.638 kb on - strandat 811.708 kb on + strandat 811.708 kb on + strandat 811.709 kb on - strandat 811.806 kb on + strand, within IAI46_03720at 811.819 kb on + strand, within IAI46_03720at 811.837 kb on - strand, within IAI46_03720at 811.936 kb on - strand, within IAI46_03720at 811.946 kb on + strand, within IAI46_03720at 811.946 kb on + strand, within IAI46_03720at 811.946 kb on + strand, within IAI46_03720at 811.946 kb on + strand, within IAI46_03720at 811.946 kb on + strand, within IAI46_03720at 811.947 kb on - strand, within IAI46_03720at 811.952 kb on - strand, within IAI46_03720at 812.014 kb on + strand, within IAI46_03720at 812.014 kb on + strand, within IAI46_03720at 812.014 kb on + strand, within IAI46_03720at 812.014 kb on + strand, within IAI46_03720at 812.014 kb on + strand, within IAI46_03720at 812.015 kb on - strand, within IAI46_03720at 812.026 kb on - strand, within IAI46_03720at 812.160 kb on + strand, within IAI46_03720at 812.175 kb on - strand, within IAI46_03720at 812.175 kb on - strand, within IAI46_03720at 812.175 kb on - strand, within IAI46_03720at 812.179 kb on + strand, within IAI46_03720at 812.180 kb on - strand, within IAI46_03720at 812.215 kb on + strand, within IAI46_03720at 812.215 kb on + strand, within IAI46_03720at 812.216 kb on - strand, within IAI46_03720at 812.216 kb on - strand, within IAI46_03720at 812.410 kb on + strand, within IAI46_03720at 812.411 kb on - strand, within IAI46_03720at 812.411 kb on - strand, within IAI46_03720at 812.411 kb on - strand, within IAI46_03720at 812.444 kb on - strand, within IAI46_03720at 812.468 kb on + strand, within IAI46_03720at 812.469 kb on - strand, within IAI46_03720at 812.477 kb on + strand, within IAI46_03720at 812.495 kb on + strand, within IAI46_03720at 812.518 kb on - strand, within IAI46_03720at 812.522 kb on + strand, within IAI46_03720at 812.530 kb on - strand, within IAI46_03720at 812.608 kb on - strand, within IAI46_03720at 812.611 kb on - strand, within IAI46_03720at 812.719 kb on + strand, within IAI46_03720at 812.720 kb on - strand, within IAI46_03720at 812.768 kb on + strand, within IAI46_03720at 812.769 kb on - strand, within IAI46_03720at 812.819 kb on + strand, within IAI46_03720at 812.881 kb on + strand, within IAI46_03720at 812.881 kb on + strand, within IAI46_03720at 812.881 kb on + strand, within IAI46_03720at 812.882 kb on - strand, within IAI46_03720at 812.882 kb on - strand, within IAI46_03720at 813.201 kb on + strand, within IAI46_03725at 813.201 kb on + strand, within IAI46_03725at 813.202 kb on - strand, within IAI46_03725at 813.287 kb on + strand, within IAI46_03725at 813.288 kb on - strand, within IAI46_03725at 813.365 kb on - strand, within IAI46_03725at 813.551 kb on + strand, within IAI46_03725at 813.552 kb on - strand, within IAI46_03725at 813.581 kb on - strand, within IAI46_03725at 813.701 kb on - strandat 813.703 kb on + strandat 813.703 kb on + strandat 813.704 kb on - strandat 813.704 kb on - strandat 813.704 kb on - strandat 813.748 kb on - strandat 813.756 kb on + strandat 813.800 kb on + strandat 813.801 kb on - strandat 813.818 kb on + strandat 813.819 kb on - strandat 813.819 kb on - strandat 813.859 kb on - strand, within IAI46_03730at 813.957 kb on + strand, within IAI46_03730at 813.957 kb on + strand, within IAI46_03730at 813.958 kb on - strand, within IAI46_03730at 813.958 kb on - strand, within IAI46_03730at 814.047 kb on - strand, within IAI46_03730

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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810,725 + +0.7
810,726 - -0.3
810,737 - -0.1
810,784 + -0.9
810,784 + -0.5
810,784 + +0.1
810,785 - -0.1
810,785 - +1.5
810,790 + -0.4
810,790 + -0.2
810,790 + -0.1
810,791 - +1.0
810,791 - +0.3
810,791 - -0.4
810,791 - +0.8
810,791 - -0.6
810,836 + IAI46_03715 0.11 -0.8
810,837 - IAI46_03715 0.11 -0.2
810,837 - IAI46_03715 0.11 -0.2
810,881 - IAI46_03715 0.16 -0.0
811,066 + IAI46_03715 0.36 -1.2
811,066 + IAI46_03715 0.36 +0.2
811,112 + IAI46_03715 0.41 +0.3
811,177 + IAI46_03715 0.48 +1.0
811,177 + IAI46_03715 0.48 +0.3
811,178 - IAI46_03715 0.49 -0.5
811,178 - IAI46_03715 0.49 +0.0
811,181 + IAI46_03715 0.49 -0.5
811,181 + IAI46_03715 0.49 -0.6
811,247 + IAI46_03715 0.56 -0.1
811,247 + IAI46_03715 0.56 +1.0
811,248 - IAI46_03715 0.56 +0.1
811,316 - IAI46_03715 0.64 -0.1
811,361 + IAI46_03715 0.69 -0.4
811,362 - IAI46_03715 0.69 -0.8
811,362 - IAI46_03715 0.69 +0.4
811,386 + IAI46_03715 0.71 +0.1
811,387 - IAI46_03715 0.72 -0.1
811,426 + IAI46_03715 0.76 +0.1
811,638 - +0.2
811,708 + -0.6
811,708 + -0.2
811,709 - -0.6
811,806 + IAI46_03720 0.10 -0.1
811,819 + IAI46_03720 0.11 +1.0
811,837 - IAI46_03720 0.13 -0.2
811,936 - IAI46_03720 0.20 -0.3
811,946 + IAI46_03720 0.20 -0.4
811,946 + IAI46_03720 0.20 +0.0
811,946 + IAI46_03720 0.20 -0.9
811,946 + IAI46_03720 0.20 -0.5
811,946 + IAI46_03720 0.20 +0.4
811,947 - IAI46_03720 0.20 +0.2
811,952 - IAI46_03720 0.21 -1.2
812,014 + IAI46_03720 0.25 +1.0
812,014 + IAI46_03720 0.25 +0.7
812,014 + IAI46_03720 0.25 +0.1
812,014 + IAI46_03720 0.25 +0.5
812,014 + IAI46_03720 0.25 -0.2
812,015 - IAI46_03720 0.25 -0.5
812,026 - IAI46_03720 0.26 +0.3
812,160 + IAI46_03720 0.35 -0.8
812,175 - IAI46_03720 0.36 +0.3
812,175 - IAI46_03720 0.36 -0.7
812,175 - IAI46_03720 0.36 +0.6
812,179 + IAI46_03720 0.37 +0.4
812,180 - IAI46_03720 0.37 -1.2
812,215 + IAI46_03720 0.39 +0.4
812,215 + IAI46_03720 0.39 -0.2
812,216 - IAI46_03720 0.39 +0.2
812,216 - IAI46_03720 0.39 -0.3
812,410 + IAI46_03720 0.53 +0.4
812,411 - IAI46_03720 0.53 -0.1
812,411 - IAI46_03720 0.53 +1.9
812,411 - IAI46_03720 0.53 -0.4
812,444 - IAI46_03720 0.55 +0.4
812,468 + IAI46_03720 0.57 +0.5
812,469 - IAI46_03720 0.57 -0.6
812,477 + IAI46_03720 0.57 -0.9
812,495 + IAI46_03720 0.59 -1.5
812,518 - IAI46_03720 0.60 +0.7
812,522 + IAI46_03720 0.61 +0.1
812,530 - IAI46_03720 0.61 -1.0
812,608 - IAI46_03720 0.67 +0.6
812,611 - IAI46_03720 0.67 -0.5
812,719 + IAI46_03720 0.74 +0.2
812,720 - IAI46_03720 0.74 -1.2
812,768 + IAI46_03720 0.78 -0.0
812,769 - IAI46_03720 0.78 -1.4
812,819 + IAI46_03720 0.81 +0.1
812,881 + IAI46_03720 0.86 +0.6
812,881 + IAI46_03720 0.86 -0.5
812,881 + IAI46_03720 0.86 +1.8
812,882 - IAI46_03720 0.86 +0.8
812,882 - IAI46_03720 0.86 +0.5
813,201 + IAI46_03725 0.18 +0.3
813,201 + IAI46_03725 0.18 -2.2
813,202 - IAI46_03725 0.18 +0.5
813,287 + IAI46_03725 0.32 -1.1
813,288 - IAI46_03725 0.32 -0.7
813,365 - IAI46_03725 0.44 -0.5
813,551 + IAI46_03725 0.74 +0.3
813,552 - IAI46_03725 0.74 +0.1
813,581 - IAI46_03725 0.79 -1.1
813,701 - -0.4
813,703 + -0.4
813,703 + +0.6
813,704 - +0.2
813,704 - -0.2
813,704 - +0.6
813,748 - +0.4
813,756 + -0.5
813,800 + +0.1
813,801 - -1.0
813,818 + -1.0
813,819 - -0.4
813,819 - -0.3
813,859 - IAI46_03730 0.18 +0.4
813,957 + IAI46_03730 0.49 +0.4
813,957 + IAI46_03730 0.49 +0.1
813,958 - IAI46_03730 0.49 +0.4
813,958 - IAI46_03730 0.49 +0.3
814,047 - IAI46_03730 0.77 -0.8

Or see this region's nucleotide sequence