Strain Fitness in Serratia liquefaciens MT49 around IAI46_03515

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03510 and IAI46_03515 are separated by 65 nucleotidesIAI46_03515 and IAI46_03520 overlap by 4 nucleotides IAI46_03510: IAI46_03510 - GMP reductase, at 760,178 to 761,221 _03510 IAI46_03515: IAI46_03515 - protein transport protein HofC, at 761,287 to 762,486 _03515 IAI46_03520: IAI46_03520 - type II secretion system protein GspE, at 762,483 to 763,931 _03520 Position (kb) 761 762 763Strain fitness (log2 ratio) -2 -1 0 1at 760.303 kb on + strand, within IAI46_03510at 760.303 kb on + strand, within IAI46_03510at 760.304 kb on - strand, within IAI46_03510at 760.304 kb on - strand, within IAI46_03510at 760.401 kb on + strand, within IAI46_03510at 760.412 kb on + strand, within IAI46_03510at 760.419 kb on + strand, within IAI46_03510at 760.419 kb on + strand, within IAI46_03510at 760.533 kb on + strand, within IAI46_03510at 760.534 kb on - strand, within IAI46_03510at 760.552 kb on + strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.553 kb on - strand, within IAI46_03510at 760.566 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.636 kb on + strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.637 kb on - strand, within IAI46_03510at 760.649 kb on - strand, within IAI46_03510at 760.682 kb on - strand, within IAI46_03510at 760.682 kb on - strand, within IAI46_03510at 760.705 kb on + strand, within IAI46_03510at 760.967 kb on - strand, within IAI46_03510at 761.130 kb on - strandat 761.130 kb on - strandat 761.219 kb on + strandat 761.220 kb on - strandat 761.314 kb on + strandat 761.324 kb on + strandat 761.324 kb on + strandat 761.324 kb on + strandat 761.324 kb on + strandat 761.325 kb on - strandat 761.360 kb on - strandat 761.360 kb on - strandat 761.371 kb on + strandat 761.371 kb on + strandat 761.452 kb on + strand, within IAI46_03515at 761.457 kb on + strand, within IAI46_03515at 761.457 kb on + strand, within IAI46_03515at 761.457 kb on + strand, within IAI46_03515at 761.457 kb on + strand, within IAI46_03515at 761.457 kb on + strand, within IAI46_03515at 761.458 kb on - strand, within IAI46_03515at 761.458 kb on - strand, within IAI46_03515at 761.461 kb on + strand, within IAI46_03515at 761.461 kb on + strand, within IAI46_03515at 761.461 kb on + strand, within IAI46_03515at 761.462 kb on - strand, within IAI46_03515at 761.462 kb on - strand, within IAI46_03515at 761.462 kb on - strand, within IAI46_03515at 761.462 kb on - strand, within IAI46_03515at 761.462 kb on - strand, within IAI46_03515at 761.605 kb on - strand, within IAI46_03515at 761.792 kb on + strand, within IAI46_03515at 761.792 kb on + strand, within IAI46_03515at 761.792 kb on + strand, within IAI46_03515at 761.793 kb on - strand, within IAI46_03515at 761.793 kb on - strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.798 kb on + strand, within IAI46_03515at 761.799 kb on - strand, within IAI46_03515at 761.799 kb on - strand, within IAI46_03515at 761.878 kb on - strand, within IAI46_03515at 761.956 kb on + strand, within IAI46_03515at 761.980 kb on - strand, within IAI46_03515at 762.100 kb on + strand, within IAI46_03515at 762.100 kb on + strand, within IAI46_03515at 762.101 kb on - strand, within IAI46_03515at 762.101 kb on - strand, within IAI46_03515at 762.173 kb on - strand, within IAI46_03515at 762.233 kb on - strand, within IAI46_03515at 762.233 kb on - strand, within IAI46_03515at 762.235 kb on + strand, within IAI46_03515at 762.236 kb on - strand, within IAI46_03515at 762.242 kb on - strand, within IAI46_03515at 762.242 kb on - strand, within IAI46_03515at 762.284 kb on - strand, within IAI46_03515at 762.336 kb on + strand, within IAI46_03515at 762.527 kb on - strandat 762.528 kb on + strandat 762.528 kb on + strandat 762.528 kb on + strandat 762.529 kb on - strandat 762.685 kb on + strand, within IAI46_03520at 762.685 kb on + strand, within IAI46_03520at 762.685 kb on + strand, within IAI46_03520at 762.686 kb on - strand, within IAI46_03520at 762.686 kb on - strand, within IAI46_03520at 762.688 kb on - strand, within IAI46_03520at 762.688 kb on - strand, within IAI46_03520at 762.703 kb on + strand, within IAI46_03520at 762.820 kb on - strand, within IAI46_03520at 762.824 kb on + strand, within IAI46_03520at 762.824 kb on + strand, within IAI46_03520at 762.825 kb on - strand, within IAI46_03520at 762.825 kb on - strand, within IAI46_03520at 762.891 kb on - strand, within IAI46_03520at 762.891 kb on - strand, within IAI46_03520at 763.051 kb on - strand, within IAI46_03520at 763.051 kb on - strand, within IAI46_03520at 763.053 kb on + strand, within IAI46_03520at 763.054 kb on - strand, within IAI46_03520at 763.148 kb on + strand, within IAI46_03520at 763.149 kb on - strand, within IAI46_03520at 763.183 kb on + strand, within IAI46_03520at 763.184 kb on - strand, within IAI46_03520at 763.184 kb on - strand, within IAI46_03520at 763.185 kb on + strand, within IAI46_03520at 763.249 kb on - strand, within IAI46_03520at 763.286 kb on + strand, within IAI46_03520at 763.387 kb on + strand, within IAI46_03520at 763.387 kb on + strand, within IAI46_03520at 763.387 kb on + strand, within IAI46_03520at 763.391 kb on + strand, within IAI46_03520at 763.391 kb on + strand, within IAI46_03520at 763.391 kb on + strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520at 763.392 kb on - strand, within IAI46_03520

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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760,303 + IAI46_03510 0.12 +0.4
760,303 + IAI46_03510 0.12 +0.4
760,304 - IAI46_03510 0.12 +0.7
760,304 - IAI46_03510 0.12 -1.6
760,401 + IAI46_03510 0.21 +1.4
760,412 + IAI46_03510 0.22 +0.1
760,419 + IAI46_03510 0.23 +0.3
760,419 + IAI46_03510 0.23 +0.5
760,533 + IAI46_03510 0.34 -0.1
760,534 - IAI46_03510 0.34 -1.3
760,552 + IAI46_03510 0.36 +0.7
760,553 - IAI46_03510 0.36 +0.7
760,553 - IAI46_03510 0.36 -0.0
760,553 - IAI46_03510 0.36 +0.5
760,553 - IAI46_03510 0.36 -0.3
760,566 + IAI46_03510 0.37 +0.4
760,636 + IAI46_03510 0.44 -0.5
760,636 + IAI46_03510 0.44 +0.4
760,636 + IAI46_03510 0.44 -0.1
760,636 + IAI46_03510 0.44 +0.6
760,637 - IAI46_03510 0.44 +0.3
760,637 - IAI46_03510 0.44 +0.7
760,637 - IAI46_03510 0.44 -0.3
760,637 - IAI46_03510 0.44 +1.0
760,637 - IAI46_03510 0.44 -0.9
760,649 - IAI46_03510 0.45 -0.6
760,682 - IAI46_03510 0.48 -0.2
760,682 - IAI46_03510 0.48 +0.5
760,705 + IAI46_03510 0.50 +0.6
760,967 - IAI46_03510 0.76 +0.5
761,130 - +0.3
761,130 - -0.3
761,219 + +0.3
761,220 - -0.3
761,314 + +1.0
761,324 + -0.6
761,324 + +0.4
761,324 + -0.1
761,324 + -0.0
761,325 - -1.8
761,360 - +1.6
761,360 - -0.3
761,371 + +1.2
761,371 + -0.5
761,452 + IAI46_03515 0.14 +0.4
761,457 + IAI46_03515 0.14 +0.1
761,457 + IAI46_03515 0.14 +0.3
761,457 + IAI46_03515 0.14 -1.1
761,457 + IAI46_03515 0.14 +1.4
761,457 + IAI46_03515 0.14 +0.3
761,458 - IAI46_03515 0.14 +0.2
761,458 - IAI46_03515 0.14 +0.3
761,461 + IAI46_03515 0.14 -0.4
761,461 + IAI46_03515 0.14 +0.8
761,461 + IAI46_03515 0.14 +0.8
761,462 - IAI46_03515 0.15 +0.0
761,462 - IAI46_03515 0.15 +0.3
761,462 - IAI46_03515 0.15 +0.2
761,462 - IAI46_03515 0.15 +0.1
761,462 - IAI46_03515 0.15 +0.5
761,605 - IAI46_03515 0.27 -0.3
761,792 + IAI46_03515 0.42 +0.8
761,792 + IAI46_03515 0.42 +1.4
761,792 + IAI46_03515 0.42 -0.5
761,793 - IAI46_03515 0.42 +0.2
761,793 - IAI46_03515 0.42 -1.2
761,798 + IAI46_03515 0.43 -0.4
761,798 + IAI46_03515 0.43 +0.7
761,798 + IAI46_03515 0.43 +0.3
761,798 + IAI46_03515 0.43 -0.2
761,799 - IAI46_03515 0.43 -0.2
761,799 - IAI46_03515 0.43 +0.8
761,878 - IAI46_03515 0.49 +0.4
761,956 + IAI46_03515 0.56 -0.3
761,980 - IAI46_03515 0.58 -1.2
762,100 + IAI46_03515 0.68 +0.4
762,100 + IAI46_03515 0.68 +0.5
762,101 - IAI46_03515 0.68 +0.5
762,101 - IAI46_03515 0.68 +0.6
762,173 - IAI46_03515 0.74 -0.3
762,233 - IAI46_03515 0.79 +0.6
762,233 - IAI46_03515 0.79 +0.3
762,235 + IAI46_03515 0.79 -0.6
762,236 - IAI46_03515 0.79 -0.4
762,242 - IAI46_03515 0.80 +0.6
762,242 - IAI46_03515 0.80 -0.2
762,284 - IAI46_03515 0.83 +0.5
762,336 + IAI46_03515 0.87 +1.6
762,527 - +1.4
762,528 + -0.8
762,528 + -1.0
762,528 + +0.5
762,529 - +0.5
762,685 + IAI46_03520 0.14 +0.2
762,685 + IAI46_03520 0.14 +0.6
762,685 + IAI46_03520 0.14 -0.1
762,686 - IAI46_03520 0.14 +0.0
762,686 - IAI46_03520 0.14 +0.8
762,688 - IAI46_03520 0.14 -0.2
762,688 - IAI46_03520 0.14 +0.4
762,703 + IAI46_03520 0.15 -0.7
762,820 - IAI46_03520 0.23 -0.6
762,824 + IAI46_03520 0.24 +0.3
762,824 + IAI46_03520 0.24 +0.2
762,825 - IAI46_03520 0.24 +1.3
762,825 - IAI46_03520 0.24 +1.0
762,891 - IAI46_03520 0.28 -1.1
762,891 - IAI46_03520 0.28 +1.6
763,051 - IAI46_03520 0.39 +0.7
763,051 - IAI46_03520 0.39 -0.1
763,053 + IAI46_03520 0.39 +0.4
763,054 - IAI46_03520 0.39 -0.3
763,148 + IAI46_03520 0.46 -0.2
763,149 - IAI46_03520 0.46 +0.8
763,183 + IAI46_03520 0.48 -0.0
763,184 - IAI46_03520 0.48 +0.1
763,184 - IAI46_03520 0.48 +0.3
763,185 + IAI46_03520 0.48 -0.6
763,249 - IAI46_03520 0.53 +0.8
763,286 + IAI46_03520 0.55 +1.3
763,387 + IAI46_03520 0.62 -0.2
763,387 + IAI46_03520 0.62 +0.6
763,387 + IAI46_03520 0.62 -0.4
763,391 + IAI46_03520 0.63 +0.2
763,391 + IAI46_03520 0.63 +0.1
763,391 + IAI46_03520 0.63 +0.6
763,392 - IAI46_03520 0.63 -0.4
763,392 - IAI46_03520 0.63 +0.9
763,392 - IAI46_03520 0.63 -0.2
763,392 - IAI46_03520 0.63 +0.4
763,392 - IAI46_03520 0.63 +0.5
763,392 - IAI46_03520 0.63 -0.3

Or see this region's nucleotide sequence