Strain Fitness in Serratia liquefaciens MT49 around IAI46_02765

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02760 and IAI46_02765 are separated by 157 nucleotidesIAI46_02765 and IAI46_02770 are separated by 315 nucleotides IAI46_02760: IAI46_02760 - 4-hydroxyphenylacetate permease, at 593,645 to 594,967 _02760 IAI46_02765: IAI46_02765 - 4-hydroxyphenylacetate catabolism regulatory protein HpaA, at 595,125 to 596,033 _02765 IAI46_02770: IAI46_02770 - 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component, at 596,349 to 597,911 _02770 Position (kb) 595 596 597Strain fitness (log2 ratio) -2 -1 0 1 2at 594.130 kb on + strand, within IAI46_02760at 594.130 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.181 kb on + strand, within IAI46_02760at 594.182 kb on - strand, within IAI46_02760at 594.182 kb on - strand, within IAI46_02760at 594.292 kb on + strand, within IAI46_02760at 594.292 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.458 kb on + strand, within IAI46_02760at 594.459 kb on - strand, within IAI46_02760at 594.459 kb on - strand, within IAI46_02760at 594.461 kb on - strand, within IAI46_02760at 594.470 kb on + strand, within IAI46_02760at 594.470 kb on + strand, within IAI46_02760at 594.471 kb on - strand, within IAI46_02760at 594.471 kb on - strand, within IAI46_02760at 594.505 kb on + strand, within IAI46_02760at 594.505 kb on + strand, within IAI46_02760at 594.505 kb on + strand, within IAI46_02760at 594.506 kb on - strand, within IAI46_02760at 594.547 kb on + strand, within IAI46_02760at 594.547 kb on + strand, within IAI46_02760at 594.547 kb on + strand, within IAI46_02760at 594.565 kb on + strand, within IAI46_02760at 594.566 kb on - strand, within IAI46_02760at 594.593 kb on - strand, within IAI46_02760at 594.619 kb on + strand, within IAI46_02760at 594.619 kb on + strand, within IAI46_02760at 594.620 kb on - strand, within IAI46_02760at 594.655 kb on + strand, within IAI46_02760at 594.655 kb on + strand, within IAI46_02760at 594.668 kb on + strand, within IAI46_02760at 594.847 kb on + strandat 594.848 kb on - strandat 594.965 kb on + strandat 594.966 kb on - strandat 594.966 kb on - strandat 594.975 kb on - strandat 594.977 kb on + strandat 594.978 kb on - strandat 595.025 kb on + strandat 595.026 kb on - strandat 595.026 kb on - strandat 595.029 kb on + strandat 595.029 kb on + strandat 595.030 kb on - strandat 595.038 kb on + strandat 595.105 kb on + strandat 595.106 kb on - strandat 595.106 kb on - strandat 595.172 kb on + strandat 595.173 kb on - strandat 595.173 kb on - strandat 595.186 kb on - strandat 595.186 kb on - strandat 595.218 kb on + strand, within IAI46_02765at 595.218 kb on + strand, within IAI46_02765at 595.219 kb on - strand, within IAI46_02765at 595.219 kb on - strand, within IAI46_02765at 595.318 kb on + strand, within IAI46_02765at 595.319 kb on - strand, within IAI46_02765at 595.344 kb on + strand, within IAI46_02765at 595.344 kb on + strand, within IAI46_02765at 595.345 kb on - strand, within IAI46_02765at 595.388 kb on - strand, within IAI46_02765at 595.556 kb on + strand, within IAI46_02765at 595.600 kb on + strand, within IAI46_02765at 595.647 kb on - strand, within IAI46_02765at 595.647 kb on - strand, within IAI46_02765at 595.664 kb on + strand, within IAI46_02765at 595.664 kb on + strand, within IAI46_02765at 595.776 kb on + strand, within IAI46_02765at 595.777 kb on - strand, within IAI46_02765at 595.897 kb on + strand, within IAI46_02765at 595.911 kb on - strand, within IAI46_02765at 595.944 kb on - strandat 596.032 kb on - strandat 596.092 kb on + strandat 596.146 kb on + strandat 596.197 kb on + strandat 596.197 kb on + strandat 596.197 kb on + strandat 596.197 kb on + strandat 596.197 kb on + strandat 596.197 kb on + strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.198 kb on - strandat 596.212 kb on + strandat 596.213 kb on - strandat 596.315 kb on + strandat 596.315 kb on + strandat 596.316 kb on - strandat 596.316 kb on - strandat 596.325 kb on - strandat 596.347 kb on + strandat 596.347 kb on + strandat 596.347 kb on + strandat 596.348 kb on - strandat 596.436 kb on + strandat 596.436 kb on + strandat 596.436 kb on + strandat 596.436 kb on + strandat 596.437 kb on - strandat 596.437 kb on - strandat 596.438 kb on + strandat 596.439 kb on - strandat 596.442 kb on + strandat 596.442 kb on + strandat 596.442 kb on + strandat 596.443 kb on - strandat 596.443 kb on - strandat 596.487 kb on - strandat 596.514 kb on + strand, within IAI46_02770at 596.515 kb on - strand, within IAI46_02770at 596.515 kb on - strand, within IAI46_02770at 596.515 kb on - strand, within IAI46_02770at 596.515 kb on - strand, within IAI46_02770at 596.584 kb on - strand, within IAI46_02770at 596.670 kb on + strand, within IAI46_02770at 596.697 kb on + strand, within IAI46_02770at 596.742 kb on + strand, within IAI46_02770at 596.742 kb on + strand, within IAI46_02770at 596.743 kb on - strand, within IAI46_02770at 596.743 kb on - strand, within IAI46_02770at 596.802 kb on + strand, within IAI46_02770at 596.802 kb on + strand, within IAI46_02770at 596.803 kb on - strand, within IAI46_02770at 596.803 kb on - strand, within IAI46_02770at 596.808 kb on - strand, within IAI46_02770at 596.871 kb on + strand, within IAI46_02770at 596.872 kb on - strand, within IAI46_02770at 596.957 kb on + strand, within IAI46_02770

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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594,130 + IAI46_02760 0.37 +1.0
594,130 + IAI46_02760 0.37 +0.4
594,181 + IAI46_02760 0.41 -0.5
594,181 + IAI46_02760 0.41 -0.6
594,181 + IAI46_02760 0.41 +1.1
594,181 + IAI46_02760 0.41 +0.1
594,181 + IAI46_02760 0.41 +1.3
594,182 - IAI46_02760 0.41 +1.0
594,182 - IAI46_02760 0.41 +0.1
594,292 + IAI46_02760 0.49 +0.9
594,292 + IAI46_02760 0.49 -0.4
594,458 + IAI46_02760 0.61 +0.8
594,458 + IAI46_02760 0.61 -0.1
594,458 + IAI46_02760 0.61 -0.1
594,458 + IAI46_02760 0.61 +0.5
594,458 + IAI46_02760 0.61 +0.9
594,458 + IAI46_02760 0.61 +0.5
594,459 - IAI46_02760 0.62 -0.5
594,459 - IAI46_02760 0.62 +0.3
594,461 - IAI46_02760 0.62 +0.2
594,470 + IAI46_02760 0.62 -0.6
594,470 + IAI46_02760 0.62 +1.3
594,471 - IAI46_02760 0.62 -0.4
594,471 - IAI46_02760 0.62 +0.2
594,505 + IAI46_02760 0.65 +0.1
594,505 + IAI46_02760 0.65 +0.4
594,505 + IAI46_02760 0.65 -1.1
594,506 - IAI46_02760 0.65 -0.5
594,547 + IAI46_02760 0.68 -1.8
594,547 + IAI46_02760 0.68 +0.3
594,547 + IAI46_02760 0.68 +0.3
594,565 + IAI46_02760 0.70 +0.4
594,566 - IAI46_02760 0.70 -0.9
594,593 - IAI46_02760 0.72 +0.5
594,619 + IAI46_02760 0.74 +0.6
594,619 + IAI46_02760 0.74 -0.1
594,620 - IAI46_02760 0.74 -0.2
594,655 + IAI46_02760 0.76 -0.2
594,655 + IAI46_02760 0.76 -0.0
594,668 + IAI46_02760 0.77 +1.0
594,847 + +0.5
594,848 - +0.0
594,965 + -1.4
594,966 - +0.5
594,966 - -0.9
594,975 - -0.8
594,977 + -0.0
594,978 - +0.7
595,025 + +0.7
595,026 - -0.7
595,026 - +0.0
595,029 + +1.4
595,029 + +0.9
595,030 - -0.3
595,038 + -0.2
595,105 + +0.8
595,106 - -0.3
595,106 - +0.2
595,172 + -0.6
595,173 - +0.5
595,173 - -0.9
595,186 - -1.5
595,186 - +0.2
595,218 + IAI46_02765 0.10 -0.1
595,218 + IAI46_02765 0.10 -0.3
595,219 - IAI46_02765 0.10 -0.0
595,219 - IAI46_02765 0.10 +0.4
595,318 + IAI46_02765 0.21 +0.1
595,319 - IAI46_02765 0.21 +0.8
595,344 + IAI46_02765 0.24 -0.8
595,344 + IAI46_02765 0.24 -2.0
595,345 - IAI46_02765 0.24 -0.6
595,388 - IAI46_02765 0.29 +0.5
595,556 + IAI46_02765 0.47 -1.3
595,600 + IAI46_02765 0.52 +0.6
595,647 - IAI46_02765 0.57 +0.7
595,647 - IAI46_02765 0.57 -0.1
595,664 + IAI46_02765 0.59 +0.8
595,664 + IAI46_02765 0.59 +2.3
595,776 + IAI46_02765 0.72 -0.6
595,777 - IAI46_02765 0.72 +0.5
595,897 + IAI46_02765 0.85 +1.2
595,911 - IAI46_02765 0.86 -0.5
595,944 - +0.7
596,032 - -0.4
596,092 + -0.4
596,146 + +0.3
596,197 + +0.3
596,197 + -0.1
596,197 + +0.0
596,197 + +0.5
596,197 + -0.7
596,197 + +0.1
596,198 - -0.3
596,198 - +0.8
596,198 - -0.4
596,198 - -1.3
596,198 - -0.2
596,198 - +0.1
596,198 - -0.8
596,198 - +0.1
596,198 - -0.3
596,212 + -0.1
596,213 - +0.4
596,315 + +1.0
596,315 + +0.4
596,316 - -0.2
596,316 - +0.7
596,325 - +0.1
596,347 + +0.2
596,347 + +0.5
596,347 + +0.3
596,348 - -0.2
596,436 + +0.9
596,436 + +1.4
596,436 + -0.3
596,436 + -0.7
596,437 - +0.3
596,437 - -1.8
596,438 + +0.1
596,439 - -0.2
596,442 + +1.2
596,442 + +0.6
596,442 + -0.2
596,443 - -0.9
596,443 - -0.1
596,487 - +1.2
596,514 + IAI46_02770 0.11 +1.0
596,515 - IAI46_02770 0.11 +0.0
596,515 - IAI46_02770 0.11 +1.0
596,515 - IAI46_02770 0.11 +0.6
596,515 - IAI46_02770 0.11 +0.1
596,584 - IAI46_02770 0.15 +0.1
596,670 + IAI46_02770 0.21 +0.5
596,697 + IAI46_02770 0.22 +0.3
596,742 + IAI46_02770 0.25 -0.4
596,742 + IAI46_02770 0.25 +0.0
596,743 - IAI46_02770 0.25 -0.6
596,743 - IAI46_02770 0.25 +1.3
596,802 + IAI46_02770 0.29 +0.2
596,802 + IAI46_02770 0.29 +0.5
596,803 - IAI46_02770 0.29 +0.3
596,803 - IAI46_02770 0.29 +0.0
596,808 - IAI46_02770 0.29 +0.2
596,871 + IAI46_02770 0.33 +0.2
596,872 - IAI46_02770 0.33 -0.2
596,957 + IAI46_02770 0.39 +0.8

Or see this region's nucleotide sequence