Strain Fitness in Serratia liquefaciens MT49 around IAI46_02475

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02470 and IAI46_02475 are separated by 193 nucleotidesIAI46_02475 and IAI46_02480 are separated by 27 nucleotides IAI46_02470: IAI46_02470 - HNH endonuclease, at 529,697 to 530,470 _02470 IAI46_02475: IAI46_02475 - hypothetical protein, at 530,664 to 530,855 _02475 IAI46_02480: IAI46_02480 - 6-phospho-beta-glucosidase, at 530,883 to 532,313 _02480 Position (kb) 530 531Strain fitness (log2 ratio) -1 0 1at 529.688 kb on - strandat 529.695 kb on + strandat 529.756 kb on + strandat 529.803 kb on + strand, within IAI46_02470at 529.825 kb on - strand, within IAI46_02470at 529.847 kb on + strand, within IAI46_02470at 529.888 kb on + strand, within IAI46_02470at 529.988 kb on - strand, within IAI46_02470at 529.994 kb on - strand, within IAI46_02470at 529.994 kb on - strand, within IAI46_02470at 530.040 kb on + strand, within IAI46_02470at 530.046 kb on + strand, within IAI46_02470at 530.047 kb on - strand, within IAI46_02470at 530.047 kb on - strand, within IAI46_02470at 530.048 kb on + strand, within IAI46_02470at 530.072 kb on + strand, within IAI46_02470at 530.072 kb on + strand, within IAI46_02470at 530.073 kb on - strand, within IAI46_02470at 530.138 kb on - strand, within IAI46_02470at 530.300 kb on + strand, within IAI46_02470at 530.301 kb on - strand, within IAI46_02470at 530.314 kb on + strand, within IAI46_02470at 530.315 kb on - strand, within IAI46_02470at 530.318 kb on + strand, within IAI46_02470at 530.318 kb on + strand, within IAI46_02470at 530.319 kb on - strand, within IAI46_02470at 530.319 kb on - strand, within IAI46_02470at 530.344 kb on + strand, within IAI46_02470at 530.372 kb on - strand, within IAI46_02470at 530.416 kb on + strandat 530.418 kb on + strandat 530.418 kb on + strandat 530.418 kb on + strandat 530.418 kb on + strandat 530.419 kb on - strandat 530.419 kb on - strandat 530.419 kb on - strandat 530.419 kb on - strandat 530.419 kb on - strandat 530.419 kb on - strandat 530.439 kb on - strandat 530.502 kb on + strandat 530.515 kb on - strandat 530.519 kb on - strandat 530.544 kb on - strandat 530.574 kb on + strandat 530.575 kb on - strandat 530.594 kb on - strandat 530.613 kb on + strandat 530.614 kb on - strandat 530.633 kb on + strandat 530.634 kb on - strandat 530.634 kb on - strandat 530.663 kb on - strandat 530.702 kb on - strand, within IAI46_02475at 530.708 kb on + strand, within IAI46_02475at 530.709 kb on - strand, within IAI46_02475at 530.709 kb on - strand, within IAI46_02475at 530.709 kb on - strand, within IAI46_02475at 530.721 kb on + strand, within IAI46_02475at 530.724 kb on + strand, within IAI46_02475at 530.724 kb on + strand, within IAI46_02475at 530.725 kb on - strand, within IAI46_02475at 530.725 kb on - strand, within IAI46_02475at 530.725 kb on - strand, within IAI46_02475at 530.725 kb on - strand, within IAI46_02475at 530.747 kb on - strand, within IAI46_02475at 530.904 kb on - strandat 530.923 kb on + strandat 530.989 kb on + strandat 531.061 kb on + strand, within IAI46_02480at 531.124 kb on + strand, within IAI46_02480at 531.124 kb on + strand, within IAI46_02480at 531.125 kb on - strand, within IAI46_02480at 531.147 kb on + strand, within IAI46_02480at 531.226 kb on + strand, within IAI46_02480at 531.226 kb on + strand, within IAI46_02480at 531.293 kb on + strand, within IAI46_02480at 531.379 kb on + strand, within IAI46_02480at 531.380 kb on - strand, within IAI46_02480at 531.380 kb on - strand, within IAI46_02480at 531.380 kb on - strand, within IAI46_02480at 531.380 kb on - strand, within IAI46_02480at 531.444 kb on - strand, within IAI46_02480at 531.444 kb on - strand, within IAI46_02480at 531.466 kb on - strand, within IAI46_02480at 531.478 kb on + strand, within IAI46_02480at 531.479 kb on - strand, within IAI46_02480at 531.679 kb on - strand, within IAI46_02480at 531.689 kb on - strand, within IAI46_02480at 531.689 kb on - strand, within IAI46_02480at 531.689 kb on - strand, within IAI46_02480at 531.788 kb on - strand, within IAI46_02480

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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529,688 - +0.9
529,695 + +0.5
529,756 + +0.7
529,803 + IAI46_02470 0.14 +0.6
529,825 - IAI46_02470 0.17 +1.7
529,847 + IAI46_02470 0.19 +0.5
529,888 + IAI46_02470 0.25 +0.5
529,988 - IAI46_02470 0.38 +0.2
529,994 - IAI46_02470 0.38 -0.4
529,994 - IAI46_02470 0.38 +0.2
530,040 + IAI46_02470 0.44 -0.0
530,046 + IAI46_02470 0.45 +0.3
530,047 - IAI46_02470 0.45 +0.7
530,047 - IAI46_02470 0.45 +0.1
530,048 + IAI46_02470 0.45 +0.6
530,072 + IAI46_02470 0.48 -0.5
530,072 + IAI46_02470 0.48 +1.1
530,073 - IAI46_02470 0.49 -0.0
530,138 - IAI46_02470 0.57 -0.9
530,300 + IAI46_02470 0.78 +0.1
530,301 - IAI46_02470 0.78 -0.4
530,314 + IAI46_02470 0.80 +0.4
530,315 - IAI46_02470 0.80 -0.4
530,318 + IAI46_02470 0.80 +0.1
530,318 + IAI46_02470 0.80 +0.5
530,319 - IAI46_02470 0.80 -0.2
530,319 - IAI46_02470 0.80 -0.0
530,344 + IAI46_02470 0.84 -1.3
530,372 - IAI46_02470 0.87 -0.6
530,416 + +0.2
530,418 + +0.2
530,418 + +0.4
530,418 + -0.1
530,418 + +1.0
530,419 - +0.7
530,419 - +0.2
530,419 - -0.2
530,419 - +0.6
530,419 - +0.7
530,419 - +0.2
530,439 - +1.2
530,502 + -0.9
530,515 - -0.1
530,519 - +0.8
530,544 - -0.5
530,574 + -0.3
530,575 - +0.0
530,594 - +0.0
530,613 + -0.1
530,614 - +0.2
530,633 + +0.2
530,634 - -0.6
530,634 - -0.2
530,663 - +0.8
530,702 - IAI46_02475 0.20 +0.5
530,708 + IAI46_02475 0.23 -0.1
530,709 - IAI46_02475 0.23 +0.4
530,709 - IAI46_02475 0.23 +0.7
530,709 - IAI46_02475 0.23 +0.7
530,721 + IAI46_02475 0.30 +0.9
530,724 + IAI46_02475 0.31 +1.1
530,724 + IAI46_02475 0.31 +0.6
530,725 - IAI46_02475 0.32 +0.5
530,725 - IAI46_02475 0.32 +0.3
530,725 - IAI46_02475 0.32 +0.5
530,725 - IAI46_02475 0.32 +0.3
530,747 - IAI46_02475 0.43 +0.8
530,904 - -1.4
530,923 + -0.4
530,989 + +0.2
531,061 + IAI46_02480 0.12 +0.6
531,124 + IAI46_02480 0.17 +0.1
531,124 + IAI46_02480 0.17 +0.0
531,125 - IAI46_02480 0.17 +0.3
531,147 + IAI46_02480 0.18 +0.9
531,226 + IAI46_02480 0.24 +0.8
531,226 + IAI46_02480 0.24 +0.3
531,293 + IAI46_02480 0.29 +1.1
531,379 + IAI46_02480 0.35 +0.6
531,380 - IAI46_02480 0.35 -0.7
531,380 - IAI46_02480 0.35 -0.0
531,380 - IAI46_02480 0.35 -0.4
531,380 - IAI46_02480 0.35 +0.3
531,444 - IAI46_02480 0.39 +1.0
531,444 - IAI46_02480 0.39 -0.6
531,466 - IAI46_02480 0.41 -0.2
531,478 + IAI46_02480 0.42 +0.3
531,479 - IAI46_02480 0.42 +0.3
531,679 - IAI46_02480 0.56 +0.6
531,689 - IAI46_02480 0.56 -0.2
531,689 - IAI46_02480 0.56 +0.1
531,689 - IAI46_02480 0.56 +0.1
531,788 - IAI46_02480 0.63 +0.4

Or see this region's nucleotide sequence